Construct: ORF TRCN0000469664
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002670.1_s317c1
- Derived from:
- ccsbBroadEn_13708
- DNA Barcode:
- TTGCTGAACACTAGGTTCTGGTGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC541473 (541473)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469664
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100101148 | LOC100101148 | FKBP prolyl isomerase 6 pse... | NR_104007.1 | 34.6% | 1_132del;436_875del | |
| 2 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | NM_001281304.2 | 30.3% | 27.5% | (many diffs) |
| 3 | human | 541473 | LOC541473 | FKBP prolyl isomerase 6 pse... | NR_003602.3 | 29.9% | 1_180del;355_444del;574_1013del | |
| 4 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | XM_017012742.1 | 29.5% | 24.7% | (many diffs) |
| 5 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | NM_001362789.2 | 27.9% | 25% | (many diffs) |
| 6 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | NM_003602.5 | 27.5% | 25% | (many diffs) |
| 7 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | XM_017012741.1 | 24.9% | 20.9% | (many diffs) |
| 8 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | NM_001135211.3 | 24.5% | 20.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 393
- ORF length:
- 303
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGGGGGAAG CGCGTTAAAC CAGGGAGTCC 121 TGGAAGGGGA CGACGCCCCC GGCCAGTCCC TGTACGAGCG GTTAAGTCAG AGGATGCTGG 181 ACATCTCGGG GGACCGGGGC GTGCTGAAGG ACGTCATCCG AGAAGGAGCT GGAGACCTAG 241 TGGCGCCTGA TGCTTCGGTG CTAGATATTA CATTGTGGGG CATGGAGCTG GGCCTTCTGA 301 GCATGCAGAG AGGAGAGCTG GCCAGATGCT TCGTCTTGGG TAAACTCCTC GACTCCCAAG 361 GCCCCAGCCT CCATCTTTAC CTCAGAGCCT CCTGCCCAAC TTTCTTGTAC AAAGTGGTTG 421 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 481 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATT 541 GCTGAACACT AGGTTCTGGT GTACGCGTTA AGTCgacaat caacctctgg attacaaaat 601 ttgtgaaaga tt