Construct: ORF TRCN0000469807
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016038.1_s317c1
- Derived from:
- ccsbBroadEn_11311
- DNA Barcode:
- CGAGGCGTACGCATAGCAACATTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NRP2 (8828)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469807
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8828 | NRP2 | neuropilin 2 | NM_201264.1 | 16.5% | 14.8% | (many diffs) |
| 2 | human | 8828 | NRP2 | neuropilin 2 | XR_923057.3 | 12.3% | (many diffs) | |
| 3 | human | 8828 | NRP2 | neuropilin 2 | XR_923056.3 | 12% | (many diffs) | |
| 4 | human | 8828 | NRP2 | neuropilin 2 | XM_017005188.2 | 10.8% | 9.7% | (many diffs) |
| 5 | human | 8828 | NRP2 | neuropilin 2 | XM_017005187.2 | 10.8% | 9.7% | (many diffs) |
| 6 | human | 8828 | NRP2 | neuropilin 2 | NM_201267.2 | 10.2% | 9.2% | (many diffs) |
| 7 | human | 8828 | NRP2 | neuropilin 2 | NM_018534.4 | 10.1% | 9.1% | (many diffs) |
| 8 | human | 8828 | NRP2 | neuropilin 2 | NM_201279.2 | 10.1% | 9.1% | (many diffs) |
| 9 | human | 8828 | NRP2 | neuropilin 2 | NM_003872.3 | 9.9% | 8.9% | (many diffs) |
| 10 | human | 8828 | NRP2 | neuropilin 2 | NM_201266.2 | 9.9% | 8.9% | (many diffs) |
| 11 | human | 8828 | NRP2 | neuropilin 2 | XR_923055.3 | 4.9% | (many diffs) | |
| 12 | mouse | 18187 | Nrp2 | neuropilin 2 | NM_001077407.1 | 9.8% | 8.7% | (many diffs) |
| 13 | mouse | 18187 | Nrp2 | neuropilin 2 | NM_001077406.1 | 9.7% | 8.7% | (many diffs) |
| 14 | mouse | 18187 | Nrp2 | neuropilin 2 | NM_001077405.1 | 9.7% | 8.6% | (many diffs) |
| 15 | mouse | 18187 | Nrp2 | neuropilin 2 | NM_010939.2 | 9.6% | 8.6% | (many diffs) |
| 16 | mouse | 18187 | Nrp2 | neuropilin 2 | NM_001077404.1 | 9.5% | 8.5% | (many diffs) |
| 17 | mouse | 18187 | Nrp2 | neuropilin 2 | NM_001077403.1 | 9.5% | 8.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 157
- ORF end:
- 454
- ORF length:
- 297
- Sequence:
-
1 GGCACTTGAT GTAATTCTCC TTGGAATTTG CCCTTTTTGA GTTTGGATCT TGGTTCATTC 61 TCAAGCCTCA GACAGTGGTT CAAAGTTTTT TTCTTCCATT TCAGGTGTCG TGAGGCTAGC 121 ATCGATTGAT CAACAAGTTT GTACAAAAAA GTTGGCATGG ATATGTTTCC TCTCACCTGG 181 GTTTTCTTAG CCCTCTACTT TTCAAGACAC CAAGTGAGAG GCCAACCAGA CCCACCGTGC 241 GGAGGTCGTT TGAATTCCAA AGATGCTGGC TATATCACCT CTCCCGGTTA CCCCCAGGAC 301 TACCCCTCCC ACCAGAACTG CGAGTGGATT GTTTACGCCC CCGAACCCAA CCAGAAGATT 361 GTCCTCAACT TCAACCCTCA CTTTGAAATC GAGAAGCACG ACTGCAACTT GCTGTCTGCT 421 TGGAAAATTT CACTCACAAG CCGCAGCTTT GCCTGCCCAA CTTTCTTGTA CAAAGTGGTT 481 GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT 541 AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC 601 GAGGCGTACG CATAGCAACA TTAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa 661 tttgtgaaag att