Construct: ORF TRCN0000469946

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018148.1_s317c1
Derived from:
ccsbBroadEn_10759
DNA Barcode:
TCGTTAACGTGATGTTACGGGCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CTNNA1 (1495)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469946
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1495 CTNNA1 catenin alpha 1 NM_001290312.1 99.8% 100% 951G>A;1110G>A
2 human 1495 CTNNA1 catenin alpha 1 NM_001323987.1 99.8% 100% 951G>A;1110G>A
3 human 1495 CTNNA1 catenin alpha 1 NM_001323988.1 99.8% 100% 951G>A;1110G>A
4 human 1495 CTNNA1 catenin alpha 1 NM_001323989.1 99.8% 100% 951G>A;1110G>A
5 human 1495 CTNNA1 catenin alpha 1 NM_001323990.1 99.8% 100% 951G>A;1110G>A
6 human 1495 CTNNA1 catenin alpha 1 NM_001323991.1 99.8% 100% 951G>A;1110G>A
7 human 1495 CTNNA1 catenin alpha 1 NM_001323992.1 99.8% 100% 951G>A;1110G>A
8 human 1495 CTNNA1 catenin alpha 1 NM_001323993.1 99.8% 100% 951G>A;1110G>A
9 human 1495 CTNNA1 catenin alpha 1 NM_001323994.1 99.8% 100% 951G>A;1110G>A
10 human 1495 CTNNA1 catenin alpha 1 NM_001323995.1 99.8% 100% 951G>A;1110G>A
11 human 1495 CTNNA1 catenin alpha 1 NM_001323996.1 99.8% 100% 951G>A;1110G>A
12 human 1495 CTNNA1 catenin alpha 1 NM_001323997.1 99.8% 100% 951G>A;1110G>A
13 human 1495 CTNNA1 catenin alpha 1 NM_001323998.1 99.8% 100% 951G>A;1110G>A
14 human 1495 CTNNA1 catenin alpha 1 NM_001323999.1 99.8% 100% 951G>A;1110G>A
15 human 1495 CTNNA1 catenin alpha 1 NM_001324000.1 99.8% 100% 951G>A;1110G>A
16 human 1495 CTNNA1 catenin alpha 1 NM_001324011.1 94% 94.2% 184_185ins93;858G>A;1017G>A
17 human 1495 CTNNA1 catenin alpha 1 NM_001324001.1 91.4% 91.6% 951G>A;1110G>A;1188_1189ins135
18 human 1495 CTNNA1 catenin alpha 1 NM_001324002.1 84.7% 83.3% (many diffs)
19 human 1495 CTNNA1 catenin alpha 1 NM_001324003.1 84.7% 83.3% (many diffs)
20 human 1495 CTNNA1 catenin alpha 1 NM_001324004.1 84.7% 83.3% (many diffs)
21 human 1495 CTNNA1 catenin alpha 1 NM_001324005.1 84.7% 83.3% (many diffs)
22 human 1495 CTNNA1 catenin alpha 1 NM_001324012.1 84.7% 84.8% 0_1ins243;708G>A;867G>A
23 human 1495 CTNNA1 catenin alpha 1 NM_001324013.1 84.7% 84.8% 0_1ins243;708G>A;867G>A
24 human 1495 CTNNA1 catenin alpha 1 NM_001324006.1 78.7% 78.9% 0_1ins339;612G>A;771G>A
25 human 1495 CTNNA1 catenin alpha 1 NM_001324007.1 78.7% 78.9% 0_1ins339;612G>A;771G>A
26 human 1495 CTNNA1 catenin alpha 1 NM_001324008.1 78.7% 78.9% 0_1ins339;612G>A;771G>A
27 human 1495 CTNNA1 catenin alpha 1 NM_001324009.1 78.7% 78.9% 0_1ins339;612G>A;771G>A
28 human 1495 CTNNA1 catenin alpha 1 NM_001324010.1 78.7% 78.9% 0_1ins339;612G>A;771G>A
29 human 1495 CTNNA1 catenin alpha 1 NM_001290310.3 68.3% 68.4% 1_741del;1692G>A;1851G>A
30 human 1495 CTNNA1 catenin alpha 1 NM_001290309.3 66.6% 66.7% 1_801del;1752G>A;1911G>A
31 human 1495 CTNNA1 catenin alpha 1 NM_001323982.2 59% 59.1% 1_1110del;2061G>A;2220G>A
32 human 1495 CTNNA1 catenin alpha 1 NM_001323983.1 59% 59.1% 1_1110del;2061G>A;2220G>A
33 human 1495 CTNNA1 catenin alpha 1 NM_001323984.2 59% 59.1% 1_1110del;2061G>A;2220G>A
34 human 1495 CTNNA1 catenin alpha 1 NM_001903.5 59% 59.1% 1_1110del;2061G>A;2220G>A
35 human 1495 CTNNA1 catenin alpha 1 NM_001323985.2 58% 58.1% (many diffs)
36 human 1495 CTNNA1 catenin alpha 1 NM_001323986.2 55.6% 55.7% (many diffs)
37 human 1495 CTNNA1 catenin alpha 1 NM_001290307.2 50.4% 49.3% (many diffs)
38 mouse 12385 Ctnna1 catenin (cadherin associate... XM_006525548.3 91.6% 100% (many diffs)
39 mouse 12385 Ctnna1 catenin (cadherin associate... NM_009818.1 54.1% 59.1% (many diffs)
40 mouse 12385 Ctnna1 catenin (cadherin associate... XM_011246818.2 54.1% 59.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1674
ORF length:
1608
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac caagaagacc agggacttgc gtagacagct ccgcaaagct gtcatggacc
121acgtttcaga ttctttcctg gaaaccaatg ttccactttt ggtattgatt gaagctgcaa
181agaatggaaa tgagaaagaa gttaaggagt atgcccaagt tttccgtgaa catgccaaca
241aattgattga ggttgccaac ttggcctgtt ccatctcaaa taatgaagaa ggtgtaaagc
301ttgttcgaat gtctgcaagc cagttagaag ccctctgtcc tcaggttatt aatgctgcac
361tggctttagc agcaaaacca cagagtaaac tggcccaaga gaacatggat ctttttaaag
421aacaatggga aaaacaagtc cgtgttctca cagatgctgt cgatgacatt acttccattg
481atgacttctt ggctgtctca gagaatcaca ttttggaaga tgtgaacaaa tgtgtcattg
541ctctccaaga gaaggatgtg gatggcctgg accgcacagc tggtgcaatt cgaggccggg
601cagcccgggt cattcacgta gtcacctcag agatggacaa ctatgagcca ggagtctaca
661cagagaaggt tctggaagcc actaagctgc tctccaacac agtcatgcca cgttttactg
721agcaagtaga agcagccgtg gaagccctca gctcggaccc tgcccagccc atggatgaga
781atgagtttat cgatgcttcc cgcctggtat atgatggcat ccgggacatc aggaaagcag
841tgctgatgat aaggacccct gaggagttgg atgactctga ctttgagaca gaagattttg
901atgtcagaag caggacgagc gtccagacag aagacgatca gctgatagct ggccagagtg
961cccgggcgat catggctcag cttccccagg agcaaaaagc gaagattgcg gaacaagtgg
1021ccagcttcca ggaagaaaag agcaagctgg atgctgaagt gtccaaatgg gacgacagtg
1081gcaatgacat cattgtgctg gccaagcaga tgtgcatgat tatgatggag atgacagact
1141ttacccgagg taaaggacca ctcaaaaata catcagatgt catcagtgct gccaagaaaa
1201ttgcTGAGGC AGGATCCAGG ATGGACAAGC TTGGCCGCAC CATTGCAGAC CATTGCCCCG
1261ACTCGGCTTG CAAGCAGGAC CTGCTGGCCT ACCTGCAACG CATCGCCCTC TACTGCCACC
1321AGCTGAACAT CTGCAGCAAG GTCAAGGCCG AGGTGCAGAA TCTCGGCGGG GAGCTTGTTG
1381TCTCTGGGGT GGACAGCGCC ATGTCCCTGA TCCAGGCAGC CAAGAACTTG ATGAATGCTG
1441TGGTGCAGAC AGTGAAGGCA TCCTACGTCG CCTCTACCAA ATACCAAAAG TCACAGGGTA
1501TGGCTTCCCT CAACCTTCCT GCTGTGTCAT GGAAGATGAA GGCACCAGAG AAAAAGCCAT
1561TGGTGAAGAG AGAGAAACAG GATGAGACAC AGACCAAGAT TAAACGGGCA TCTCAGAAGA
1621AGCACGTGAA CCCGGTGCAG GCCCTCAGCG AGTTCAAAGC TATGGACAGC ATCTACCCAA
1681CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1741ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1801TATCTTGTGG AAAGGACGAT CGTTAACGTG ATGTTACGGG CCTACGCGTT AAGTCgacaa
1861tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)