Construct: ORF TRCN0000470016

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006884.1_s317c1
Derived from:
ccsbBroadEn_11374
DNA Barcode:
CCGTGTAAGATCCGAATACCGCAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSMF1 (9491)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470016
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_006814.5 69.8% 56% (many diffs)
2 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_178578.3 69.8% 56% (many diffs)
3 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_001323407.2 69.5% 57.4% (many diffs)
4 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_001323410.2 65.4% 50.3% (many diffs)
5 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_001323408.2 65.3% 51.5% (many diffs)
6 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_001323409.2 65% 50.1% (many diffs)
7 mouse 228769 Psmf1 proteasome (prosome, macrop... NM_001305244.1 62.2% 59% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
732
ORF length:
666
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc taagaagctt gggcccaaat ctcagagaca gcgtggggct gttgcccccc
121tcacccaggt ccagcaggcg gcctgttccc ccacttataa acaggccaag cgcaatgcca
181ggagctatca gggccgccgc cgccgccgtc gttgcagcca gaataccact tccagggttc
241ctagccaact gcaagcagtt gactcttcat ctgcttcctg caggacctac aagaacagtg
301aggagcttcg gTCTCGTATT GTGTCTGGAA TCATCACACC TATCCATGAG CAGTGGGAAA
361AGGCTAATGT AAGCAGTCCC CACCGGGAGT TCCCCCCTGC TACCGCCAGA GAGGTGGACC
421CACTCCGGAT TCCTCCACAC CACCCACACA CCAGTCGGCA GCCTCCCTGG TGTGATCCCC
481TGGGCCCGTT TGTTGTCGGG GGAGAAGACT TAGACCCTTT TGGGCCTCGG AGAGGTGGCA
541TGATTGTGGA TCCCCTGAGA TCTGGCTTCC CAAGAGCACT TATTGACCCT TCCTCAGGCC
601TCCCGAACCG ACTTCCTCCA GGCGCTGTGC CCCCAGGAGC TCGCTTTGAC CCCTTTGGAC
661CCATTGGGAC CAGCCCACCC GGACCTAACC CAGACCATCT CCCCCCGCCG GGCTACGATG
721ACATGTACCT GTGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
781ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
841CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACCG TGTAAGATCC GAATACCGCA
901AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)