Transcript: Mouse NM_001305244.1

Mus musculus proteasome (prosome, macropain) inhibitor subunit 1 (Psmf1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Psmf1 (228769)
Length:
3323
CDS:
278..751

Additional Resources:

NCBI RefSeq record:
NM_001305244.1
NBCI Gene record:
Psmf1 (228769)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001305244.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000066616 GTGGTGACAAACGGCTACTAT pLKO.1 259 5UTR 100% 5.625 3.938 N Psmf1 n/a
2 TRCN0000325582 GTGGTGACAAACGGCTACTAT pLKO_005 259 5UTR 100% 5.625 3.938 N Psmf1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001305244.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11374 pDONR223 100% 62.2% 59% None (many diffs) n/a
2 ccsbBroad304_11374 pLX_304 0% 62.2% 59% V5 (many diffs) n/a
3 TRCN0000470016 CCGTGTAAGATCCGAATACCGCAA pLX_317 62.8% 62.2% 59% V5 (many diffs) n/a
4 ccsbBroadEn_07428 pDONR223 100% 50.6% 48.3% None (many diffs) n/a
5 ccsbBroad304_07428 pLX_304 0% 50.6% 48.3% V5 (many diffs) n/a
6 TRCN0000468513 TACATAGCAGATTGTGTGAAATTA pLX_317 41.2% 50.6% 48.3% V5 (many diffs) n/a
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