Construct: ORF TRCN0000470038

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013629.1_s317c1
Derived from:
ccsbBroadEn_12101
DNA Barcode:
TCCAAATCTAAAAAGGGACATTCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PIGG (54872)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470038
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54872 PIGG phosphatidylinositol glycan... XM_011513492.1 96.6% 96.6% 1_63del
2 human 54872 PIGG phosphatidylinositol glycan... NM_001345994.1 95.3% 95.3% 1_63del;233_234ins24
3 human 54872 PIGG phosphatidylinositol glycan... NM_001345988.1 94.3% 94.3% 1_108del
4 human 54872 PIGG phosphatidylinositol glycan... NM_001345990.1 78.1% 78.1% 0_1ins396
5 human 54872 PIGG phosphatidylinositol glycan... NM_001345991.1 78.1% 78.1% 0_1ins396
6 human 54872 PIGG phosphatidylinositol glycan... NM_001289052.1 71% 71% 1_738del
7 human 54872 PIGG phosphatidylinositol glycan... XM_011513491.2 70.1% 70.1% 1_771del
8 human 54872 PIGG phosphatidylinositol glycan... NM_001289051.1 67.5% 67.5% 1_870del
9 human 54872 PIGG phosphatidylinositol glycan... NM_001345986.1 67.5% 67.5% 1_870del
10 human 54872 PIGG phosphatidylinositol glycan... NM_001345987.1 66.6% 66.6% 1_870del;1040_1041ins24
11 human 54872 PIGG phosphatidylinositol glycan... NM_001127178.3 61.4% 61.4% 1_1137del
12 human 54872 PIGG phosphatidylinositol glycan... NM_017733.4 60.6% 60.6% 1_1137del;1307_1308ins24
13 human 54872 PIGG phosphatidylinositol glycan... XM_011513490.3 55.1% 53.6% (many diffs)
14 human 54872 PIGG phosphatidylinositol glycan... NR_110293.1 48.5% 1_1273del;1422_1423ins46;3040_3594del
15 human 54872 PIGG phosphatidylinositol glycan... XR_001741255.2 48% 1_1249del;1918_1919ins262;2800_2964del
16 human 54872 PIGG phosphatidylinositol glycan... XR_001741253.2 47.6% (many diffs)
17 human 54872 PIGG phosphatidylinositol glycan... XR_001741248.2 46.8% (many diffs)
18 human 54872 PIGG phosphatidylinositol glycan... XR_001741251.2 46.5% 1_1249del;2180_2846del;3729_3893del
19 human 54872 PIGG phosphatidylinositol glycan... XR_001741262.2 45.3% (many diffs)
20 human 54872 PIGG phosphatidylinositol glycan... NR_144327.1 43.4% 1_1273del;2396_2652del;3343_4172del
21 human 54872 PIGG phosphatidylinositol glycan... XR_001741258.2 43.4% (many diffs)
22 human 54872 PIGG phosphatidylinositol glycan... NR_144328.1 40.2% (many diffs)
23 human 54872 PIGG phosphatidylinositol glycan... XR_924972.3 38.4% (many diffs)
24 human 54872 PIGG phosphatidylinositol glycan... NR_144330.1 38.3% 1_1273del;2397_2398ins310;2776_3605del
25 human 54872 PIGG phosphatidylinositol glycan... XR_924969.3 37.9% (many diffs)
26 human 54872 PIGG phosphatidylinositol glycan... NR_144326.1 37.8% 1_1509del;3105_3737del;3955_4784del
27 human 54872 PIGG phosphatidylinositol glycan... XR_002959736.1 36.3% (many diffs)
28 human 54872 PIGG phosphatidylinositol glycan... NR_144329.1 36.2% (many diffs)
29 human 54872 PIGG phosphatidylinositol glycan... NR_144331.1 36.1% 1_1509del;2633_2634ins310;3012_3841del
30 human 54872 PIGG phosphatidylinositol glycan... NR_144332.1 34.6% 1_1273del;1748_1749ins455;2631_3460del
31 human 54872 PIGG phosphatidylinositol glycan... XR_924965.3 29.1% 1_1249del;2681_5668del;6050_6214del
32 human 54872 PIGG phosphatidylinositol glycan... XR_001741259.2 29.1% 1_1249del;1443_1471del;2179_2180ins911
33 human 54872 PIGG phosphatidylinositol glycan... XR_924967.3 25.4% (many diffs)
34 human 54872 PIGG phosphatidylinositol glycan... NM_001345989.2 21.6% 18.6% (many diffs)
35 human 54872 PIGG phosphatidylinositol glycan... NM_001289053.1 19.8% 19.2% (many diffs)
36 human 54872 PIGG phosphatidylinositol glycan... XR_001741254.2 17.4% (many diffs)
37 human 54872 PIGG phosphatidylinositol glycan... XM_011513494.3 16.9% 16.3% (many diffs)
38 human 54872 PIGG phosphatidylinositol glycan... XR_002959737.1 14.2% (many diffs)
39 human 54872 PIGG phosphatidylinositol glycan... XR_002959738.1 13.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1878
ORF length:
1812
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc agaaagattg catgggaact ggatcagact gtacttggag gaaaagcatt
121cagaagtcct attcaacctg ggctccaagg ttctcaggca gtacctggat gctctgaaga
181cgctgagctt gtccctgagt gcacaagtgg cccagtacga catctattcg atgatggtgg
241ggactgtcgt ggttttggag gttctcaccc tgctcctgct cagcgtccca caggcactgc
301gcagaaaggc tgagctggaa gtcccactgt catctcctgg gttttctctg ctcttttatt
361tggtgatcct ggttctttcg gccgttcacg tcattgtgtg cacctcagct gaaagttcgt
421gctacttctg tggcctctcg tggctggcgg caggtggggt gatggtgctg gcctcggcgc
481tgctgtgtgt gattgtgtct gttctgacca acgtgctcgt gggtggaaac accccaagga
541agaaccccat gcatcccagc tcaaggtggt cagagctaga ccttcttatt ctgttgggga
601cggcgggcca cgtcttgagc ctgggcgcca gcagcttcgt ggaggaggag caccagacct
661ggtacttcct tgtgaacacc ctgtgtctag ctctgagcca agaaacctac agaaactact
721ttctgggaga tgacggtgag cctccgtgtg gcctctgtgt ggaacaaggg catgacgggg
781ccacagcagc gtggcaggac gggcctggct gtgatgtcct ggagcgagac aaaggccacg
841gaagcccctc tacctccgaa gtgctcagag gccgcgagaa gtggatggtg ctggccagtc
901cgtggctaat actggcctgc tgccggctgc tgcgctccct aaaccagaca ggtgtgcagt
961gggctcaccg gcctgacctc ggccactggc tcaccagctc tgaccacaaa gccgagctct
1021ctgtcctggc tgccctctcc ctcctcgtag tttttgtgct ggtgcagagg gggtgctccc
1081ctgtgtccaa ggctgccctg gcgctggggc tgctgggcgt ctactgctac cgggcggcca
1141tcgggagtgt ccggttcccg tggcggccgg acagcaagga catttccaag ggtattattg
1201aagctcgttt tgtttatgtc tttgtccttg gcattctgtt cacgggcacc aaagacttac
1261ttaaatctca agtcattgct gcagacttca aactcaagac tgtaggttta tgggagatat
1321atagtggatt agttcttctg gcagccttgc tctttagacc acataatctt ccggtcttag
1381catttagcct cttgattcag actctaatga ctaaattcat ctggaagccc ctgagacacg
1441atgcagctga gattactgtg atgcattatt ggtttggtca agcatTCTTC TATTTTCAGG
1501GCAACTCCAA CAACATTGCC ACCGTGGACA TCTCCGCAGG CTTCGTGGGC TTAGACACCT
1561ACGTGGAAAT CCCAGCCGTG CTCCTGACAG CGTTTGGGAC GTACGCAGGG CCTGTGCTGT
1621GGGCCAGCCA CTTAGTGCAC TTCCTGAGCT CAGAAACACG CAGTGGTTCA GCACTGAGTC
1681ATGCTTGCTT CTGCTACGCA CTGATTTGTT CTATTCCAGT TTTCACGTAC ATCGTTTTGG
1741TGACATCTCT GCGTTATCAT TTATTTATAT GGAGTGTATT TTCTCCAAAA CTTCTCTACG
1801AGGGAATGCA CCTGCTCATT ACAGCTGCTG TCTGTGTATT CTTCACGGCA ATGGATCAAA
1861CCAGACTCAC ACAGTCTTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1921TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1981GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATCCAAAT CTAAAAAGGG
2041ACATTCTACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)

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