Construct: ORF TRCN0000470095

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005910.1_s317c1
Derived from:
ccsbBroadEn_01512
DNA Barcode:
CAATAATGTCCATTTTTAATCTCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SDCBP (6386)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470095
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6386 SDCBP syndecan binding protein NM_001007067.1 100% 100%
2 human 6386 SDCBP syndecan binding protein NM_005625.4 100% 100%
3 human 6386 SDCBP syndecan binding protein NM_001007069.1 99.6% 99.6% 239_240insGCA
4 human 6386 SDCBP syndecan binding protein NM_001007070.1 99.6% 99.6% 239_240insGCA
5 human 6386 SDCBP syndecan binding protein NM_001007068.1 97.9% 97.9% 31_32insAGGTAGACAAAGTAATTC
6 human 6386 SDCBP syndecan binding protein NM_001348340.1 93.7% 93.7% 1_60del
7 human 6386 SDCBP syndecan binding protein XM_024447230.1 93.7% 93.7% 1_60del
8 human 6386 SDCBP syndecan binding protein NM_001348341.1 93.4% 93.4% 1_63del
9 human 6386 SDCBP syndecan binding protein XM_024447229.1 93.4% 93.4% 1_63del
10 human 6386 SDCBP syndecan binding protein NM_001330537.1 93.1% 93.1% 1_63del;302_303insGCA
11 human 6386 SDCBP syndecan binding protein XM_024447231.1 93.1% 93.1% 1_63del;302_303insGCA
12 human 6386 SDCBP syndecan binding protein NM_001348339.1 80.2% 80.2% 239_240ins177
13 mouse 53378 Sdcbp syndecan binding protein NM_001098227.1 86.6% 90.3% (many diffs)
14 mouse 53378 Sdcbp syndecan binding protein XM_006538084.3 86.6% 90.3% (many diffs)
15 mouse 53378 Sdcbp syndecan binding protein NM_016807.2 86.2% 89.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
963
ORF length:
894
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtctctctat ccatctctcg aagacttgaa ggtagacaaa gtaattcagg
121ctcaaactgc tttttctgca aaccctgcca atccagcaat tttgtcagaa gcttctgctc
181ctatccctca cgatggaaat ctctatccca gactgtatcc agagctctct caatacatgg
241ggctgagttt aaatgaagaa gaaatacgtg caaatgtggc cgtggtttct ggtgcaccac
301ttcaggggca gttggtagca agaccttcca gtataaacta tatggtggct cctgtaactg
361gtaatgatgt tggaattcgt agagcagaaa ttaagcaagg gattcgtgaa gtcattttgt
421gtaaggatca agatggaaaa attggactca ggcttaaatc aatagataat ggtatatttg
481ttcagctagt ccaggctaat tctccagcct cattggttgg tcTGAGATTT GGGGACCAAG
541TACTTCAGAT CAATGGTGAA AACTGTGCAG GATGGAGCTC TGATAAAGCG CACAAGGTGC
601TCAAACAGGC TTTTGGAGAG AAGATTACCA TGACCATTCG TGACAGGCCC TTTGAACGGA
661CGATTACCAT GCATAAGGAT AGCACTGGAC ATGTTGGTTT TATCTTTAAA AATGGAAAAA
721TAACATCCAT AGTGAAAGAT AGCTCTGCAG CCAGAAATGG TCTTCTCACG GAACATAACA
781TCTGTGAAAT CAATGGACAG AATGTCATTG GATTGAAGGA CTCTCAAATT GCAGACATAC
841TGTCAACATC TGGGACTGTA GTTACTATTA CAATCATGCC TGCTTTTATC TTTGAACATA
901TTATTAAGCG GATGGCACCA AGCATTATGA AAAGCCTAAT GGACCACACC ATTCCTGAGG
961TTTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1021TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1081GGCTTTATAT ATCTTGTGGA AAGGACGACA ATAATGTCCA TTTTTAATCT CTACGCGTTA
1141AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)