Construct: ORF TRCN0000470136

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013448.1_s317c1
Derived from:
ccsbBroadEn_02405
DNA Barcode:
ATCATCAAGTGCACTAAAACGTCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TFG (10342)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470136
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10342 TFG trafficking from ER to golg... NM_001007565.2 100% 100%
2 human 10342 TFG trafficking from ER to golg... NM_001195478.1 100% 100%
3 human 10342 TFG trafficking from ER to golg... NM_006070.6 100% 100%
4 human 10342 TFG trafficking from ER to golg... XM_006713472.1 100% 100%
5 human 10342 TFG trafficking from ER to golg... XM_011512334.1 100% 100%
6 human 10342 TFG trafficking from ER to golg... NM_001195479.1 99% 99% 707_708insAGGTCAGATTGA
7 human 10342 TFG trafficking from ER to golg... XM_005247066.2 99% 99% 707_708insAGGTCAGATTGA
8 human 10342 TFG trafficking from ER to golg... XM_017005527.1 99% 99% 707_708insAGGTCAGATTGA
9 mouse 21787 Tfg Trk-fused gene NM_019678.3 89.9% 93.5% (many diffs)
10 mouse 21787 Tfg Trk-fused gene XM_006521980.2 89.9% 93.5% (many diffs)
11 mouse 21787 Tfg Trk-fused gene XM_006521981.3 88.9% 92.5% (many diffs)
12 mouse 21787 Tfg Trk-fused gene NM_001252443.1 78.1% 81.7% (many diffs)
13 mouse 21787 Tfg Trk-fused gene XM_006521982.3 63.7% 65.8% (many diffs)
14 mouse 21787 Tfg Trk-fused gene XM_006521983.3 62.7% 64.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1266
ORF length:
1200
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa cggacagttg gatctaagtg ggaagctaat catcaaagct caacttgggg
121aggatattcg gcgaattcct attcataatg aagatattac ttatgatgaa ttagtgctaa
181tgatgcaacg agttttcaga ggaaaacttc tgagtaatga tgaagtaaca ataaagtata
241aagatgaaga tggagatctt ataacaattt ttgatagttc tgacctttcc tttgcaattc
301agtgcagtag gatactgaaa ctgacattat ttgttaatgg ccagccaaga ccccttgaat
361caagtcaggt gaaatatctc cgtcgagaac tgatagaact tcgaaataaa gtgaatcgtt
421tattggatag cttggaacca cctggagaac caggaccttc caccaatatt cctgaaaatg
481atactgtgga tggtagggaa gaaaagtctg cttctgattc ttctggaaaa cagtctactc
541aggttatggc agcaagtatg tctgcttttg atcctttaaa aaaccaagat gaaatcaata
601aaaatgttat gtcagcgttt ggcttaacag atgatcaggt ttcagggcca cccagtgctc
661ctgcagaaga tcgttcagga acacccgaca gcattgcttc ctcctcctca gcagctcacc
721caccaggcgt tcagccacag cagccaccat atacaggagc tcagactcaa gcaggtcaga
781ttgaaggtca gatgtaccaa cagtaccagc aacaggccgg ctatggtgca cagcagccgc
841aggctccacc tcagcagcct caacagtatg gtattcagta ttcagcaagc tatagtcagc
901agactggacc tcaacaaccT CAGCAGTTCC AGGGATATGG CCAGCAACCA ACTTCCCAGG
961CACCAGCTCC TGCCTTTTCT GGTCAGCCTC AACAACTGCC TGCTCAGCCG CCACAGCAGT
1021ACCAGGCGAG CAATTATCCT GCACAAACTT ACACTGCCCA AACTTCTCAG CCTACTAATT
1081ATACTGTGGC TCCTGCCTCT CAACCTGGAA TGGCTCCAAG CCAACCTGGG GCCTATCAAC
1141CAAGACCAGG TTTTACTTCA CTTCCTGGAA GTACCATGAC CCCTCCTCCA AGTGGGCCTA
1201ATCCTTATGC GCGTAACCGT CCTCCCTTTG GTCAGGGCTA TACCCAACCT GGACCTGGTT
1261ATCGATACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1321TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1381CTTGGCTTTA TATATCTTGT GGAAAGGACG AATCATCAAG TGCACTAAAA CGTCCACGCG
1441TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)