Construct: ORF TRCN0000470240

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009877.1_s317c1
Derived from:
ccsbBroadEn_03039
DNA Barcode:
AATCAGGGATAGATAGATAACCTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SGSM3 (27352)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470240
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27352 SGSM3 small G protein signaling m... NM_015705.6 100% 100%
2 human 27352 SGSM3 small G protein signaling m... NM_001350039.2 97.7% 97.7% 1989_2039del
3 human 27352 SGSM3 small G protein signaling m... NM_001350041.2 97.7% 96.5% (many diffs)
4 human 27352 SGSM3 small G protein signaling m... XM_024452223.1 96.3% 96.3% 1368_1451del
5 human 27352 SGSM3 small G protein signaling m... NM_001350040.2 95.6% 94.4% (many diffs)
6 human 27352 SGSM3 small G protein signaling m... XM_024452222.1 94.5% 94.5% 1240_1368del
7 human 27352 SGSM3 small G protein signaling m... XM_024452221.1 94.3% 94.3% 1368_1451del;2073_2123del
8 human 27352 SGSM3 small G protein signaling m... NM_001350044.2 91.5% 90.3% 0_1ins127;28_29ins62
9 human 27352 SGSM3 small G protein signaling m... NM_001350045.2 91.5% 90.3% 0_1ins127;28_29ins62
10 human 27352 SGSM3 small G protein signaling m... XM_024452219.1 91.3% 91.3% 1240_1368del;1497_1580del
11 human 27352 SGSM3 small G protein signaling m... NM_001350046.2 91% 91% 0_1ins201
12 human 27352 SGSM3 small G protein signaling m... XM_024452227.1 90.2% 90.2% 473_474ins144;1224_1307del
13 human 27352 SGSM3 small G protein signaling m... NM_001350042.2 89.5% 88.3% 0_1ins127;28_29ins62;1800_1850del
14 human 27352 SGSM3 small G protein signaling m... XM_024452220.1 89.3% 88.2% (many diffs)
15 human 27352 SGSM3 small G protein signaling m... NM_001350043.2 89% 89% 0_1ins201;1788_1838del
16 human 27352 SGSM3 small G protein signaling m... NM_001350047.2 88.8% 87.6% (many diffs)
17 human 27352 SGSM3 small G protein signaling m... XM_024452224.1 88.2% 88.2% 473_474ins144;1224_1307del;1929_1979del
18 human 27352 SGSM3 small G protein signaling m... NM_001301849.2 88.1% 86.9% 0_1ins127;28_29ins62;1438_1439ins78
19 human 27352 SGSM3 small G protein signaling m... XM_024452229.1 87.7% 87.7% 0_1ins201;1167_1250del
20 human 27352 SGSM3 small G protein signaling m... XM_024452225.1 86.3% 85.2% (many diffs)
21 human 27352 SGSM3 small G protein signaling m... XM_024452226.1 86.3% 85.2% (many diffs)
22 human 27352 SGSM3 small G protein signaling m... XM_024452228.1 85.8% 85.8% 0_1ins201;1167_1250del;1872_1922del
23 human 27352 SGSM3 small G protein signaling m... XM_017028778.1 82.7% 82.7% 0_1ins201;272_273ins144;1644_1694del
24 human 27352 SGSM3 small G protein signaling m... XR_001755218.1 80.4% (many diffs)
25 human 27352 SGSM3 small G protein signaling m... XR_937842.3 80.4% 1_165del;1690_1714del;2438_2792del
26 human 27352 SGSM3 small G protein signaling m... XR_001755224.1 80.1% (many diffs)
27 human 27352 SGSM3 small G protein signaling m... XR_001755222.2 79.9% (many diffs)
28 human 27352 SGSM3 small G protein signaling m... XR_001755220.2 79% (many diffs)
29 human 27352 SGSM3 small G protein signaling m... XR_002958687.1 78.2% (many diffs)
30 human 27352 SGSM3 small G protein signaling m... NM_001350048.2 77.8% 77.8% 0_1ins498
31 human 27352 SGSM3 small G protein signaling m... NR_146412.2 74.7% 1_206del;2056_2075del;2474_3006del
32 human 27352 SGSM3 small G protein signaling m... XR_937841.1 74.5% (many diffs)
33 human 27352 SGSM3 small G protein signaling m... NR_146415.2 74.4% (many diffs)
34 human 27352 SGSM3 small G protein signaling m... NR_146413.2 74.3% (many diffs)
35 human 27352 SGSM3 small G protein signaling m... XR_001755223.1 73.9% (many diffs)
36 human 27352 SGSM3 small G protein signaling m... XR_001755221.2 73.8% (many diffs)
37 human 27352 SGSM3 small G protein signaling m... XR_002958688.1 73.7% (many diffs)
38 human 27352 SGSM3 small G protein signaling m... XM_024452230.1 73.4% 73.4% 0_1ins498;870_953del;1575_1625del
39 human 27352 SGSM3 small G protein signaling m... XM_024452231.1 73.4% 73.4% 0_1ins498;870_953del;1575_1625del
40 human 27352 SGSM3 small G protein signaling m... XR_001755225.2 73.3% (many diffs)
41 human 27352 SGSM3 small G protein signaling m... XR_002958686.1 72.4% (many diffs)
42 human 27352 SGSM3 small G protein signaling m... NR_146414.2 71.5% (many diffs)
43 human 27352 SGSM3 small G protein signaling m... XR_001755217.1 71.2% (many diffs)
44 mouse 105835 Sgsm3 small G protein signaling m... NM_134091.2 88.3% 93.7% (many diffs)
45 mouse 105835 Sgsm3 small G protein signaling m... XM_006520244.3 87.3% 92.6% (many diffs)
46 mouse 105835 Sgsm3 small G protein signaling m... XM_006520245.3 87.3% 92.6% (many diffs)
47 mouse 105835 Sgsm3 small G protein signaling m... XM_006520246.3 87.3% 92.6% (many diffs)
48 mouse 105835 Sgsm3 small G protein signaling m... XM_006520247.3 87.1% 92.5% (many diffs)
49 mouse 105835 Sgsm3 small G protein signaling m... XM_006520248.3 87.1% 92.5% (many diffs)
50 mouse 105835 Sgsm3 small G protein signaling m... XM_006520249.3 85% 90% (many diffs)
51 mouse 105835 Sgsm3 small G protein signaling m... XM_017316358.1 69.1% 74.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2313
ORF length:
2247
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc aggaagccat acacctgcct gtggcccttt ctcagccctg actccgagca
121tatggcccca ggagatcttg gccaagtaca cgcagaagga agagtcagca gagcaaccag
181agttctacta cgatgagttt ggtttccgtg tgtacaagga agaaggtgat gagcctggct
241ccagtctgct ggcgaactcc cctctgatgg aggatgctcc acagaggctg cggtggcagg
301cccacctgga gttcacccat aaccacgatg tgggggatct cacctgggac aagattgccg
361tctccctacc ccgctctgag aagctccgct ccctggtgct ggccggcatc ccacatggca
421tgaggccaca gctgtggatg cggctctctg gggccctgca gaagaagagg aactctgagc
481tgtcctaccg cgagattgtg aagaacagct ccaacgatga gaccatcgct gccaagcaga
541tcgagaagga cctgctccgc accatgccca gcaacgcctg cttcgccagc atgggtagca
601tcggggtgcc ccgcctgcgc agggtgctcc gggccctggc ctggctctac ccagagatcg
661gctactgcca gggcaccggc atggtggccg cctgcctcct gctgttcctg gaggaggagg
721acgccttctg gatgatgtct gccatcatcg aggacctgct ccccgcctcc tacttcagca
781ccaccctgct gggtgtccag actgaccagc gggtcctgcg ccacctcatt gtccagtacc
841tgcctcgcct ggacaagctg ctccaggagc atgacattga gctgtccctg atcacactgc
901actggttcct cacggccttc gccagcgtgg tggacatcaa gctgctcctg cgcatctggg
961acctgttttt ctacgagggc tcccgggtgc tgttccagct cacgctgggc atgctgcacc
1021tcaaggagga agagctgatc cagtcagaga actcggcctc catcttcaac acgctatcgg
1081atatcccgtc gcagatggag gacgcggagc tgcttctggg ggtggccatg cggctggccg
1141gctccctcac cgatgtggcc gtggagactc agcgccgcaa gcacctggcc tatctcattg
1201cagaccaggg ccagctcctg ggggccggca ccctcaccaa cctctctcag gttgttcgcc
1261gcaggaccca gcggaggaag tccaccatca ctgctctgct cttcggggag gatgacctgg
1321aggcactcaa ggccaagaac atcaagcaga cggaactggt ggctgacctc cgggaagcca
1381tcctgcgcgt ggcacgccac ttccagtgca cagaccccaa aaactgcagc gtggagctga
1441ctccagacta tagcatggag agccaccagc gggaccacga gaactacgtg gcgtgctcac
1501gcagccaccg gcgccgagcc aaggccctgc tggactttga gcggcacgac gacgacgagc
1561tgggcttccg caagaacgac atcatcacaa tcgtgtctca gaaggacgag cactgctggg
1621tgggggagct caacggcctg cgaggctggt ttccagccaa gttcgtggaa gtcctggatg
1681agcgcagcaa agagtactcc atcgcggggg atgactcggt gacggagggg gtcacagacc
1741tcgtgcgagg gaccctctgc ccggccctta aggccctgtt cgaacatgga ctgaagaagc
1801catccctgct tGGGGGCGCC TGCCACCCCT GGCTGTTTAT CGAGGAGGCT GCAGGCCGGG
1861AGGTCGAGAG AGACTTTGCC TCCGTGTATT CCCGTCTGGT GCTCTGTAAG ACCTTCAGGT
1921TGGATGAAGA TGGCAAAGTC CTGACCCCGG AGGAGCTGCT CTACCGGGCT GTGCAGTCTG
1981TGAACGTGAC CCACGATGCA GTGCATGCAC AAATGGATGT GAAGCTCCGC TCACTGATCT
2041GCGTGGGGCT CAATGAGCAG GTGCTGCACC TGTGGCTGGA GGTGCTCTGC TCCAGCCTGC
2101CCACCGTGGA GAAGTGGTAC CAGCCCTGGT CCTTCCTGCG CAGCCCGGGC TGGGTCCAGA
2161TCAAGTGTGA GCTCCGAGTC CTCTGCTGCT TTGCCTTCAG CCTCTCCCAG GACTGGGAGC
2221TCCCTGCGAA GAGAGAGGCG CAGCAGCCCC TGAAGGAGGG CGTCCGGGAC ATGCTGGTGA
2281AGCACCACCT CTTCAGCTGG GATGTGGACG GGTGCCCAAC TTTCTTGTAC AAAGTGGTTG
2341ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
2401GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAA
2461TCAGGGATAG ATAGATAACC TTACGCGTTA AGTCgacaat caacctctgg attacaaaat
2521ttgtgaaaga tt

Download FASTA (ORF) (Full)