Construct: ORF TRCN0000470324

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001417.1_s317c1
Derived from:
ccsbBroadEn_08942
DNA Barcode:
CTAGTTCACTCCTCAGTACGAGAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BEND5 (79656)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470324
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79656 BEND5 BEN domain containing 5 NM_024603.4 99.9% 100% 733C>A
2 human 79656 BEND5 BEN domain containing 5 XM_017002331.1 84% 84% (many diffs)
3 human 79656 BEND5 BEN domain containing 5 NM_001349795.1 79.7% 79.8% 0_1ins255;478C>A
4 human 79656 BEND5 BEN domain containing 5 XM_011542141.3 79.7% 79.8% 0_1ins255;478C>A
5 human 79656 BEND5 BEN domain containing 5 XM_017002333.2 62.2% 59.8% (many diffs)
6 human 79656 BEND5 BEN domain containing 5 NR_146232.1 60.1% (many diffs)
7 human 79656 BEND5 BEN domain containing 5 NM_001302082.1 59.7% 59.8% 0_1ins507;226C>A
8 human 79656 BEND5 BEN domain containing 5 NM_001349793.1 59.7% 59.8% 0_1ins507;226C>A
9 human 79656 BEND5 BEN domain containing 5 NM_001349794.1 59.7% 59.8% 0_1ins507;226C>A
10 human 79656 BEND5 BEN domain containing 5 XM_011542142.2 59.7% 59.8% 0_1ins507;226C>A
11 human 79656 BEND5 BEN domain containing 5 XR_001737408.2 57.2% (many diffs)
12 mouse 67621 Bend5 BEN domain containing 5 NM_026279.3 94.3% 98.5% (many diffs)
13 mouse 67621 Bend5 BEN domain containing 5 XM_006503323.3 66.8% 70% (many diffs)
14 mouse 67621 Bend5 BEN domain containing 5 NR_033793.1 62.4% (many diffs)
15 mouse 67621 Bend5 BEN domain containing 5 XM_011240594.2 56.7% 59.6% (many diffs)
16 mouse 67621 Bend5 BEN domain containing 5 XM_017320366.1 56.7% 59.6% (many diffs)
17 mouse 67621 Bend5 BEN domain containing 5 XR_376343.3 34.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1329
ORF length:
1263
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgta cgcctttgtg cggttcctgg aggacaacgt ctgctacgcg ctgcccgtgt
121cgtgcgtgcg cgacttcagc ccccgctcgc ggctggattt tgacaaccag aaggtgtacg
181ccgtgtaccg gggcccggag gaattgggcg ccgggcccga gagccccccg cgcgcccccc
241gcgactgggg cgcgctgttg ctccacaagg cccagatcct ggcgctggca gaagacaaat
301ctgaccttga aaacagtgtg atgcagaaga aaataaaaat ccccaagctt tctcttaatc
361atgtagaaga agatggagag gttaaagatt atggggaaga agatttacag cttagacaca
421tcaagagacc tgaggggcgg aagccgagcg aagtggcgca caagagcatc gaggcagtgg
481tggctcggct agagaagcag aacggcctga gcctgggcca tagcacgtgt ccggaagagg
541tcttcgtgga ggcctcgcca ggcacagagg acatggacag tctagaagat gctgtggtgc
601cccgggctct gtatgaggag ctgctgcgca actaccagca gcaacaggaa gagatgcgcc
661acctccagca ggagctggag cggactcgga ggcagctggt acaacaggcc aagaagctca
721aggagtacgg ggcacttgtg tctgaaatga aggagctccg tgaccttaac cggaggctcc
781aggacgtgct gctcctgagg cttggcagcg gtcccgccat tgatctggaa aaagtaaagt
841cagaatgtct cgagcccgag ccggagttac ggagcacttt cagtgaggaa gcaaatacgt
901cgtcctatta ccccgctcct gcgcctgtca tggacaagta tatcctagac aatggcaagg
961tccatctggg AAGCGGGATT TGGGTTGATG AGGAGAAATG GCACCAGCTA CAAGTAACCC
1021AAGGAGATTC CAAGTACACG AAGAACTTGG CAGTTATGAT TTGGGGAACA GATGTTCTGA
1081AAAACAGAAG CGTCACAGGC GTCGCCACAA AAAAAAAGAA AGATGCAGTC CCTAAACCAC
1141CCCTCTCGCC TCACAAACTA AGCATCGTCA GAGAGTGTTT GTATGACAGA ATAGCACAAG
1201AAACTGTGGA TGAAACTGAA ATTGCACAGA GACTCTCCAA AGTCAACAAG TACATCTGTG
1261AAAAAATCAT GGATATCAAT AAATCCTGTA AAAATGAAGA ACGAAGGGAA GCAAAATACA
1321ATTTGCAATA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1381CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1441TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACTAGTT CACTCCTCAG TACGAGATAC
1501GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)