Construct: ORF TRCN0000470343

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010675.1_s317c1
Derived from:
ccsbBroadEn_03790
DNA Barcode:
AGGAACAGCCGACTATTCGATCCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHMP1B (57132)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470343
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57132 CHMP1B charged multivesicular body... NM_020412.5 100% 100%
2 mouse 67064 Chmp1b charged multivesicular body... NM_024190.2 92.2% 97.9% (many diffs)
3 mouse 67028 2610002M06Rik RIKEN cDNA 2610002M06 gene NM_025921.3 82% 95.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
663
ORF length:
597
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc taacatggag aaacacctgt tcaacctgaa gttcgcggcc aaagaactga
121gtaggagtgc caaaaaatgc gataaggagg aaaaggccga aaaggccaaa attaaaaagg
181ccattcagaa gggcaacatg gaagttgcga ggatacacgc cgaaaatgcc aTCCGCCAGA
241AGAACCAGGC GGTGAATTTC TTGAGAATGA GTGCGCGAGT CGATGCAGTG GCTGCCAGGG
301TCCAGACGGC GGTGACGATG GGCAAGGTGA CCAAGTCGAT GGCTGGTGTG GTTAAGTCGA
361TGGATGCGAC ATTGAAGACC ATGAATCTGG AGAAGATTTC TGCTTTGATG GACAAATTCG
421AGCACCAGTT TGAGACTCTG GACGTCCAGA CGCAGCAAAT GGAAGACACG ATGAGCAGCA
481CGACGACGCT CACCACTCCC CAGAACCAAG TGGATATGCT GCTCCAGGAA ATGGCAGATG
541AGGCGGGCCT CGACCTCAAC ATGGAGCTGC CGCAGGGCCA GACCGGCTCC GTGGGCACGA
601GCGTGGCTTC GGCGGAGCAG GATGAACTGT CTCAGAGACT GGCCCGCCTT CGGGATCAAG
661TGTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
721TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
781GGCTTTATAT ATCTTGTGGA AAGGACGAAG GAACAGCCGA CTATTCGATC CGACGCGTTA
841AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)