Transcript: Mouse NM_024190.2

Mus musculus charged multivesicular body protein 1B (Chmp1b), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Chmp1b (67064)
Length:
2529
CDS:
143..742

Additional Resources:

NCBI RefSeq record:
NM_024190.2
NBCI Gene record:
Chmp1b (67064)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_024190.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380387 TCGATGGACGCGACGTTGAAA pLKO_005 434 CDS 100% 5.625 7.875 N Chmp1b n/a
2 TRCN0000379803 GAACACCAGTTCGAGACTCTG pLKO_005 497 CDS 100% 4.050 5.670 N Chmp1b n/a
3 TRCN0000380120 GGACGTCCAGACGCAGCAAAT pLKO_005 517 CDS 100% 3.600 5.040 N Chmp1b n/a
4 TRCN0000100774 CAACATGGAAGTTGCGAGGAT pLKO.1 271 CDS 100% 2.640 3.696 N Chmp1b n/a
5 TRCN0000166391 CAACATGGAAGTTGCGAGGAT pLKO.1 271 CDS 100% 2.640 3.696 N CHMP1B n/a
6 TRCN0000381597 TCCGCTTTGATGGACAAATTC pLKO_005 476 CDS 100% 13.200 10.560 N Chmp1b n/a
7 TRCN0000381121 GGGTGAACTTCTTGAGAATGA pLKO_005 327 CDS 100% 4.950 3.960 N Chmp1b n/a
8 TRCN0000100771 CTCCGCTTTGATGGACAAATT pLKO.1 475 CDS 100% 13.200 9.240 N Chmp1b n/a
9 TRCN0000380264 ACATGGAAGTTGCGAGGATTC pLKO_005 273 CDS 100% 6.000 4.200 N Chmp1b n/a
10 TRCN0000164819 CAGAAGGGCAACATGGAAGTT pLKO.1 263 CDS 100% 4.950 3.465 N CHMP1B n/a
11 TRCN0000294692 CCATCCGCCAGAAGAATCAAG pLKO_005 306 CDS 100% 4.950 3.465 N Chmp1b n/a
12 TRCN0000100773 CGCAGCAAATGGAAGACACAA pLKO.1 528 CDS 100% 4.950 3.465 N Chmp1b n/a
13 TRCN0000307374 CTTCGGCTGAGCAAGATGAAC pLKO_005 684 CDS 100% 4.950 3.465 N Chmp1b n/a
14 TRCN0000100770 GCTCTACATAAATCTAGGAAA pLKO.1 968 3UTR 100% 4.950 3.465 N Chmp1b n/a
15 TRCN0000287188 GCTCTACATAAATCTAGGAAA pLKO_005 968 3UTR 100% 4.950 3.465 N Chmp1b n/a
16 TRCN0000294639 ACTGCAGTGACGATGGGCAAA pLKO_005 383 CDS 100% 4.050 2.835 N Chmp1b n/a
17 TRCN0000100772 CCAAAGAACTGAACCGGAGTT pLKO.1 186 CDS 100% 4.050 2.835 N Chmp1b n/a
18 TRCN0000380350 GAGAATGAGTGCACGAGTGGA pLKO_005 340 CDS 100% 2.640 1.848 N Chmp1b n/a
19 TRCN0000381274 GCCATTCAGAAGGGCAACATG pLKO_005 257 CDS 100% 4.950 2.970 N Chmp1b n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_024190.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03790 pDONR223 100% 92.2% 97.9% None (many diffs) n/a
2 ccsbBroad304_03790 pLX_304 0% 92.2% 97.9% V5 (many diffs) n/a
3 TRCN0000470343 AGGAACAGCCGACTATTCGATCCG pLX_317 71.6% 92.2% 97.9% V5 (many diffs) n/a
Download CSV