Construct: ORF TRCN0000470686

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012846.1_s317c1
Derived from:
ccsbBroadEn_09918
DNA Barcode:
TATCTAGGGATAAAATCTACCATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HEATR9 (256957)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470686
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 256957 HEATR9 HEAT repeat containing 9 NM_152781.4 99.9% 99.8% 8A>G
2 human 256957 HEATR9 HEAT repeat containing 9 XM_005278233.2 94% 94% 0_1ins102
3 human 256957 HEATR9 HEAT repeat containing 9 XM_011524586.2 94% 94% 0_1ins102
4 human 256957 HEATR9 HEAT repeat containing 9 NM_001321395.2 92.9% 92.8% 8A>G;332_333ins120
5 human 256957 HEATR9 HEAT repeat containing 9 XM_005278235.1 87% 87% 0_1ins102;230_231ins120
6 human 256957 HEATR9 HEAT repeat containing 9 NR_135630.2 84.8% (many diffs)
7 human 256957 HEATR9 HEAT repeat containing 9 XM_017024424.2 82.6% 80.8% (many diffs)
8 human 256957 HEATR9 HEAT repeat containing 9 XR_934432.3 81.5% (many diffs)
9 human 256957 HEATR9 HEAT repeat containing 9 XR_934433.1 81.3% (many diffs)
10 human 256957 HEATR9 HEAT repeat containing 9 XR_934434.1 76.3% (many diffs)
11 human 256957 HEATR9 HEAT repeat containing 9 XR_254513.3 76% (many diffs)
12 human 256957 HEATR9 HEAT repeat containing 9 XM_006721802.3 68% 68% 0_1ins546
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1779
ORF length:
1710
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcctgtgaa aaatcaactg atatctctga tgtctccagg tcaatgttcc
121tgtacccatg gctggaatat ccagacaaga ccaaagaact cagaaaagcc atggctcctg
181ttcatctgcc cttgtcctgc taccagatgc caaaggaaga gtttccccca agtccagagt
241gctggaggca gcatccgagc aagccaaact cagtcccgta ctgctacttc aagaaacctg
301agatctacac gcactggcac gacctgtatg atcagcgaga ggaaagggag gctgagaaga
361tgttgaggaa aatgagagat gactgtaggt acatcaaaga ggtacatcaa acccacatca
421aaatgttcca tctcccaatg agcaagctga ctataaaatc tgagatgcga tccaggccct
481tagagcctac ccaggacccc ctgaagtggc aaagattaag ggaactcaca aaaagcctgg
541aatctcccag agaggatgag cagttctatg cagcacaggc tctgggatgc ttacgcatca
601gtgacaagtt tgtcatggag gcactacagc aggtggccca aactggtcca gagaaagtga
661agtacgaggc ctaccgaacc ctggccatcc tgggttgcct gaataagcat gtgatccggg
721ctctcatcaa acagctgaag gagaaaaatg agggtcaaag gatggagact ttgacggggc
781tacgaatggc tcttaactcc tgggctgctg tctctaaaga caagaggact caagtcgggg
841atgagggcaa gctggtgcct gtactacaga cactgatcaa gaagtcgtcc agtgaagcat
901ctctggaggc agccctgtgc ctgggtttcc tgaggccttg cagcaacatg gtccaagagt
961tcttgttgca gtgcctgtgc caaggactca agacccagcg gatgaaggca cttaggatgc
1021tggtcaaggt gatgcacgtg cactcagccc cagtcatcaa ggccatccta gaccagctgt
1081gttcttccag tgtccttgag gaccgctttg aagccaccca aatgctcaag accattgggc
1141tggaacagat ccaggcacag gggctagagg aactcacatt taacctgctc aggaggaaga
1201cgcataatga acccttcctt gctgtgaggc aggctgtggc tcaaactgtg gaagagctca
1261agttgaagcc tacgatgatg aacttggtgg aggcacaact gatgaaccca gatgccactg
1321cacgccagga agcagtcatc tctttgggtg tcctggggat ccgcagtcca caagtgttcc
1381acttgcTCCT GGACTTACTA GATGCAGAAA ACCACCAGGC TGTGAAGAAG AGTCTACAAG
1441AAACATTAAT CCTTTGTGCC TCAATTGATC CCTGGATCCA AAACAAGCTG AAAAACAAGG
1501TTCTCTCTGT ATATGAGGCA CCTAAGACCA ATGTGAAGGC AGAGCCCACA AGGTTCCAGA
1561AAGAGCCTGA GAACCCAGAA GAGTTAACTA TTCAAGACTT TCGACTTGCA AAGCTGAACC
1621CCTTGTTTAT TGCAAAGTCC ATCACCAAAG TAGGCCAAAA GAAAACGCCT GCTTTCCCAC
1681CGTGCTGCTC GAAACCACGA AAACATAGGC CACAGGTCAT AGGGCCCTGG CAGCCAAGGA
1741TCAAGAAACA GCTCCGGGTC CTTGCTGAAA TTGCCAAATT GCCAACTTTC TTGTACAAAG
1801TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1861GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1921ACGATATCTA GGGATAAAAT CTACCATTAC GCGTTAAGTC gacaatcaac ctctggatta
1981caaaatttgt gaaagatt

Download FASTA (ORF) (Full)