Construct: ORF TRCN0000470978
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013739.1_s317c1
- Derived from:
- ccsbBroadEn_12319
- DNA Barcode:
- AGCATTAGTAGGCACGATACGAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PARP6 (56965)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470978
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_017022418.2 | 22.9% | 22.9% | 1_1098del |
| 2 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_011521805.2 | 21.9% | 21.9% | 1_1161del |
| 3 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323519.2 | 17.8% | 17.8% | 1_1503del |
| 4 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323521.2 | 17.8% | 17.8% | 1_1503del |
| 5 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323523.2 | 17.8% | 17.8% | 1_1503del |
| 6 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323524.2 | 17.8% | 17.8% | 1_1503del |
| 7 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323526.2 | 17.8% | 17.8% | 1_1503del |
| 8 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_024449998.1 | 17.8% | 17.8% | 1_1503del |
| 9 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323515.2 | 17.8% | 17.8% | 1_1506del |
| 10 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323516.2 | 17.8% | 17.8% | 1_1506del |
| 11 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323530.2 | 17.8% | 17.8% | 1_1506del |
| 12 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_024449997.1 | 17.8% | 17.8% | 1_1506del |
| 13 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323522.2 | 17.3% | 17.3% | 1_1563del |
| 14 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323532.2 | 17.3% | 17.3% | 1_1563del |
| 15 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_020214.4 | 17.3% | 17.3% | 1_1563del |
| 16 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_024449996.1 | 17.3% | 17.3% | 1_1563del |
| 17 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323525.2 | 17.2% | 17.2% | 1_1566del |
| 18 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323528.2 | 17.2% | 17.2% | 1_1566del |
| 19 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NM_001323531.2 | 17.2% | 17.2% | 1_1566del |
| 20 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XM_024449995.1 | 17.2% | 17.2% | 1_1566del |
| 21 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957664.1 | 13.4% | 1_1824del;2152_2428del | |
| 22 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957663.1 | 13% | 1_1905del;2233_2509del | |
| 23 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136603.2 | 12.8% | 1_1938del;2266_2542del | |
| 24 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136605.2 | 12.8% | 1_1944del;2272_2548del | |
| 25 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136599.2 | 12.8% | 1_1947del;2275_2551del | |
| 26 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957662.1 | 12.7% | 1_1965del;2293_2569del | |
| 27 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136608.2 | 12.5% | 1_2004del;2332_2608del | |
| 28 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136609.2 | 12.5% | 1_2004del;2332_2608del | |
| 29 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957661.1 | 12.4% | 1_2015del;2343_2619del | |
| 30 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_001751361.2 | 12.4% | 1_2018del;2346_2622del | |
| 31 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_001751362.2 | 12.3% | 1_2035del;2363_2639del | |
| 32 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136611.2 | 12.3% | 1_2054del;2382_2658del | |
| 33 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957660.1 | 12.2% | 1_2075del;2403_2679del | |
| 34 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957659.1 | 12.1% | 1_2078del;2406_2682del | |
| 35 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136607.2 | 12% | 1_2114del;2442_2718del | |
| 36 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136610.2 | 12% | 1_2117del;2445_2721del | |
| 37 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136606.2 | 11.8% | 1_2166del;2494_2770del | |
| 38 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136594.2 | 11.5% | 1_2235del;2563_2839del | |
| 39 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136604.2 | 11.4% | 1_2245del;2573_2849del | |
| 40 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | NR_136596.2 | 11.4% | 1_2257del;2585_2861del | |
| 41 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_001751363.1 | 8% | 1_1939del;2122_2123ins144 | |
| 42 | human | 56965 | PARP6 | poly(ADP-ribose) polymerase... | XR_002957665.1 | 7.9% | 1_1975del;2158_2159ins144 | |
| 43 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_006511380.3 | 20.8% | 21.4% | (many diffs) |
| 44 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313534.1 | 18.6% | 19.1% | (many diffs) |
| 45 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242801.1 | 17.6% | 18.1% | (many diffs) |
| 46 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | NM_029922.3 | 17.3% | 17.8% | (many diffs) |
| 47 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313533.1 | 17.3% | 17.8% | (many diffs) |
| 48 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242800.1 | 17.2% | 17.8% | (many diffs) |
| 49 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313532.1 | 17.2% | 17.8% | (many diffs) |
| 50 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242799.1 | 16.9% | 17.5% | (many diffs) |
| 51 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313531.1 | 16.9% | 17.5% | (many diffs) |
| 52 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | NM_001205239.1 | 16.7% | 17.3% | (many diffs) |
| 53 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313530.1 | 16.7% | 17.3% | (many diffs) |
| 54 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242798.1 | 16.7% | 17.2% | (many diffs) |
| 55 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313529.1 | 16.7% | 17.2% | (many diffs) |
| 56 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242797.1 | 16.4% | 17% | (many diffs) |
| 57 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313528.1 | 16.4% | 17% | (many diffs) |
| 58 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_006511375.2 | 16.4% | 16.9% | (many diffs) |
| 59 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242795.1 | 16.4% | 16.9% | (many diffs) |
| 60 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_011242796.1 | 16.4% | 16.9% | (many diffs) |
| 61 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XM_017313527.1 | 16.4% | 16.9% | (many diffs) |
| 62 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_870764.1 | 12.3% | (many diffs) | |
| 63 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | NR_038075.1 | 12.3% | (many diffs) | |
| 64 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | NR_038074.1 | 12.2% | (many diffs) | |
| 65 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_001778990.1 | 12.1% | (many diffs) | |
| 66 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_001778988.1 | 12% | (many diffs) | |
| 67 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_870763.1 | 12% | (many diffs) | |
| 68 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_001778989.1 | 11.8% | (many diffs) | |
| 69 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_001778987.1 | 11.8% | (many diffs) | |
| 70 | mouse | 67287 | Parp6 | poly (ADP-ribose) polymeras... | XR_870762.1 | 11.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 68
- ORF end:
- 395
- ORF length:
- 327
- Sequence:
-
1 TTTCTTCCAT TTCAGGTGTC GTGAGGCTAG CATCGATTGA TCAACAAGTT TGTACAAAAA 61 AGTTGGCATG GGAAAAGGAC AGCACAGGAT GCCCTCCAAG GATGAGCTGG TCCAGAGATA 121 CAACAGGATG AATACCATCC CCCAGACCCG ATCCATTCAG TCACGGTTCC TGCAGAGTCG 181 GAATCTAAAC TGTATAGCAC TTTGTGAAGT GATTACATCT AAGGACCTCC AGAAGCATGG 241 GAACATCTGG GTGTGCCCTG TGTCCGACCA TGTCTGCACA AGATTCTTCT TTGTATATGA 301 GGATGGTCAG GTGGGCGATG CCAACATTAA TACTCAGGAC CCCAAGATAC AGAAGGAAAT 361 CATGCGTGTG ATCGGAACTC AGGTTTACAC AAACTGCCCA ACTTTCTTGT ACAAAGTGGT 421 TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC 481 TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA 541 AGCATTAGTA GGCACGATAC GAATACGCGT TAAGTCgaca atcaacctct ggattacaaa 601 atttgtgaaa gatt