Construct: ORF TRCN0000471028

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011957.1_s317c1
Derived from:
ccsbBroadEn_15987
DNA Barcode:
CCGGGAAATGGTCAAATTATAAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VEPH1 (79674)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471028
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79674 VEPH1 ventricular zone expressed ... NM_001167915.2 100% 100%
2 human 79674 VEPH1 ventricular zone expressed ... NM_001167916.2 100% 100%
3 human 79674 VEPH1 ventricular zone expressed ... NM_001167917.1 82.9% 82.6% 530T>G;531_532ins108
4 human 79674 VEPH1 ventricular zone expressed ... XM_024453749.1 82.9% 82.6% 530T>G;531_532ins108
5 human 79674 VEPH1 ventricular zone expressed ... XM_024453750.1 82.9% 82.6% 530T>G;531_532ins108
6 human 79674 VEPH1 ventricular zone expressed ... NM_001167911.2 24.9% 22.4% (many diffs)
7 human 79674 VEPH1 ventricular zone expressed ... NM_001167912.2 23.6% 21.2% (many diffs)
8 human 79674 VEPH1 ventricular zone expressed ... NM_024621.2 23.6% 21.2% (many diffs)
9 human 79674 VEPH1 ventricular zone expressed ... XM_024453746.1 23.6% 21.2% (many diffs)
10 human 79674 VEPH1 ventricular zone expressed ... XM_024453747.1 23.6% 21.2% (many diffs)
11 human 79674 VEPH1 ventricular zone expressed ... XM_024453748.1 23.6% 21.2% (many diffs)
12 human 79674 VEPH1 ventricular zone expressed ... XM_011513134.2 20.6% 16% (many diffs)
13 human 79674 VEPH1 ventricular zone expressed ... XM_011513135.2 18.2% 15.8% (many diffs)
14 mouse 72789 Veph1 ventricular zone expressed ... XM_011240244.2 67.8% 64.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
705
ORF length:
639
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca tcaactgttc agactggttt tgggacaaaa agatctttca cgagctgggg
121acctcttctc cttagatgac tctgagattg aagacagcct tacagaagct ttggagcaaa
181ttaagataat tagctcatct tcagattacc aaaccaataa caatgaccag gcagtagttg
241aaatctgtat cacaagaatc acaacagcca TCAGAGAGAC CGAGTCCATT GAAAAGCATG
301CAAAGGCCCT TGTGGGGCTC TGGGACTCCT GCTTGGAACA TAACCTGAGA CCCTTTGGGA
361AAGACGAAGA CACTCCTCAT GCAAAAATCG CATCTGATAT CATGAGTTGC ATTTTACAGA
421ATTACAACCG ACCCCCAGTG ATGGCATTAG CCATCCCCAT TGCAGTGAAA TTCCTCCACA
481GAGGCAACAA GGAACTGTGC AGGAATATGT CTAACTACCT GTCTCTGGCT GCAATTACCA
541AGGCAGATCT CCTGGCTGAT CACACGGAAG TTATAGTAAA GAGCATACTC CAAGGTATGG
601TGCGAAAGTT GAGCTTGGGG ACATGTTTTG GGAGATATTT AAAAGTATTT TCATCAAGCA
661TTTATGGTTT GTGGGAAGCA AGACCTAGAG TATTAGAAGC AAATTACCCA ACTTTCTTGT
721ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
781AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
841GAAAGGACGA CCGGGAAATG GTCAAATTAT AAATACGCGT TAAGTCgaca atcaacctct
901ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)