Construct: ORF TRCN0000471036

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015452.1_s317c1
Derived from:
ccsbBroadEn_10802
DNA Barcode:
TAGAGCCGATTGATCGTACCCGCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EPB41L2 (2037)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471036
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2037 EPB41L2 erythrocyte membrane protei... NM_001135554.1 92.7% 91.1% (many diffs)
2 human 2037 EPB41L2 erythrocyte membrane protei... NM_001135555.3 92.7% 91.1% (many diffs)
3 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350314.1 88.8% 86.9% (many diffs)
4 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350315.1 88.8% 86.9% (many diffs)
5 human 2037 EPB41L2 erythrocyte membrane protei... NM_001252660.1 82.8% 82.5% (many diffs)
6 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350311.1 82.8% 82.5% (many diffs)
7 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350312.1 82.8% 82.5% (many diffs)
8 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350313.1 82.8% 82.5% (many diffs)
9 human 2037 EPB41L2 erythrocyte membrane protei... NM_001199388.2 74.2% 73.3% 1870delA;1901_2556del
10 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350308.1 74.2% 73.3% 1870delA;1901_2556del
11 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350309.1 74.2% 73.3% 1870delA;1901_2556del
12 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350310.1 74.2% 73.3% 1870delA;1901_2556del
13 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350307.1 72.7% 71.8% 1831_1884del;1924delA;1955_2610del
14 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350304.1 67.7% 66.8% 1870delA;1901_2805del
15 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350305.1 67.7% 66.8% 1870delA;1901_2805del
16 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350306.1 67.7% 66.8% 1870delA;1901_2805del
17 human 2037 EPB41L2 erythrocyte membrane protei... XM_011535528.2 66.4% 65.5% 1831_1884del;1924delA;1955_2859del
18 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350303.1 66.2% 65.3% 1832_1894del;1933delA;1964_2868del
19 human 2037 EPB41L2 erythrocyte membrane protei... XM_017010356.2 64.9% 63.4% 1831_2196del;2236delA;2267_2922del
20 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350302.1 62.9% 62.1% 1833_2042del;2080delA;2111_3015del
21 human 2037 EPB41L2 erythrocyte membrane protei... NM_001431.4 62.9% 62.1% 1833_2042del;2080delA;2111_3015del
22 human 2037 EPB41L2 erythrocyte membrane protei... XM_011535527.2 61.8% 61% 1831_2094del;2134delA;2165_3069del
23 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350301.1 61.8% 60.3% 1831_2196del;2236delA;2267_3072del
24 human 2037 EPB41L2 erythrocyte membrane protei... XM_011535525.2 60.9% 60.1% 1831_2142del;2182delA;2213_3117del
25 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350299.1 59.8% 58.4% 1831_2196del;2236delA;2267_3171del
26 human 2037 EPB41L2 erythrocyte membrane protei... XM_011535524.2 59.8% 58.4% 1831_2196del;2236delA;2267_3171del
27 human 2037 EPB41L2 erythrocyte membrane protei... XM_017010350.2 59.8% 58.4% 1831_2196del;2236delA;2267_3171del
28 human 2037 EPB41L2 erythrocyte membrane protei... XM_017010351.1 59.8% 58.4% 1831_2196del;2236delA;2267_3171del
29 human 2037 EPB41L2 erythrocyte membrane protei... XM_017010352.1 59.8% 58.4% 1831_2196del;2236delA;2267_3171del
30 human 2037 EPB41L2 erythrocyte membrane protei... XM_017010353.2 59.8% 58.4% 1831_2196del;2236delA;2267_3171del
31 human 2037 EPB41L2 erythrocyte membrane protei... XM_024446349.1 58.6% 57.2% 1831_2262del;2302delA;2333_3237del
32 human 2037 EPB41L2 erythrocyte membrane protei... XR_001743217.2 45.2% (many diffs)
33 human 2037 EPB41L2 erythrocyte membrane protei... XR_001743216.2 42.6% (many diffs)
34 human 2037 EPB41L2 erythrocyte membrane protei... XR_001743213.2 39.2% (many diffs)
35 human 2037 EPB41L2 erythrocyte membrane protei... NR_146620.1 39.1% (many diffs)
36 human 2037 EPB41L2 erythrocyte membrane protei... XR_001743215.2 28.1% (many diffs)
37 human 2037 EPB41L2 erythrocyte membrane protei... NM_001350320.1 24.7% 23.8% 0_1ins1206;664delA;695_1599del
38 human 2037 EPB41L2 erythrocyte membrane protei... XM_017010364.1 21.8% 20.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1965
ORF length:
1899
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac tactgaagta ggctctgtgt ctgaagtgaa gaaggactct agccagttag
121gaacagatgc aaccaaggaa aaacctaaag aagtagcaga aaatcagcag aatcagtctt
181ccgatccaga ggaggaaaaa ggttcccagc cacctcctgc agctgaaagc caaagtagtc
241tacgccgcca gaagagagag aaggaaacat cggagagcag gggtatttct cggttcatac
301cgccatggct taagaagcaa aagtcatata ccttagtagt ggccaaagat ggaggagata
361aaaaagagcc tacccaagct gttgttgaag aacaggtctt agataaagag gaaccccttc
421cagaagaaca gagacaggct aagggtgatg ctgaagaaat ggctcagaag aaacaagaga
481ttaaagttga agtcaaggaa gaaaaaccct cagtgagcaa ggaagaaaaa ccctcagtga
541gcaaagtgga gatgcagcct actgaattag taagtaagga gagagaagag aaggtaaaag
601aaacacagga agacaaatta gaaggaggag cagcaaaaag ggagaccaag gaagtgcaga
661ccaatgagct gaaagcagag aaggcatctc aaaaagtcac caagaagacc aaaactgtcc
721agtgtaaagt gaccctctta gatggcaccg aatacagctg tgacctggag aaacatgcca
781agggacaagt gttatttgac aaagtgtgtg aacacctcaa tctcttggag aaagactact
841ttggactttt gtttcaggaa agccctgagc agaaaaactg gttagatcct gctaaagaaa
901taaagagaca actgagaaac cttccatggc tattcacttt taatgtgaag ttttatcctc
961ctgatccttc tcaattgact gaagatatca ccagatactt cttgtgcctt cagctccggc
1021aggacattgc ctctggccgc ctgccctgct cttttgtgac tcatgctctc ctgggatcct
1081acaccctgca ggctgaactt ggtgactatg acccagaaga acatggcagc atcgacctca
1141gtgaattcca gtttgcccct actcagacta aggagctgga agagaaggtg gcagagctgc
1201acaaaaccca caggggctta tcgccagcac aagctgattc ccagttctta gaaaatgcaa
1261agaggctttc catgtatggt gttgacctac atcatgccaa ggactcagaa ggtgtggaca
1321tcaagctggg cgtgtgtgct aatggacttc tcatttacaa agacagactg cgaatcaatc
1381gttttgcttg gccgaaaatc ttaaaaattt cctataaacg cagtaacttc tacattaaag
1441tcagaccggc agagctggaa cagtttgaga gtaccattGG ATTCAAACTG CCAAACCACC
1501GGGCAGCGAA AAGACTATGG AAAGTGTGCG TGGAGCATCA TACTTTCTAC AGGCTTGTTT
1561CTCCAGAGCA GCCACCAAAA GCCAAGTTCC TGACCTTGGG GTCCAAATTT CGCTATAGTG
1621GCCGCACCCA AGCACAGACC CGCCAGGCCA GCACCCTCAT AGATAGGCCA GCACCACACT
1681TTGAGCGCAC TTCTAGTAAA CGGGTCTCCA GGAGTCTAGA TGGAGCTCCG ATTGGTGTCA
1741TGGACCAAAG TCTTATGAAG GATTTTCCTG GCGCTGCTGG GGAGATTTCA GCCTATGGAC
1801CTGGACTTGT CAGCATTGCC GTGGTACAAG ATGGGGACGG CAGGAGGGAA GTGAGAAGCC
1861CAACTAAAGC CCCACATTTG CAGCTCATTG AAGGAAAGAG TTCACATGAG ACTCTGAATA
1921TAGTGGAGGA GAAGAGCGGG CAGAGGTTGG GAAAGACGAA AGAGTACCCA ACTTTCTTGT
1981ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
2041AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
2101GAAAGGACGA TAGAGCCGAT TGATCGTACC CGCCACGCGT TAAGTCgaca atcaacctct
2161ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)