Construct: ORF TRCN0000471083
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003827.1_s317c1
- Derived from:
- ccsbBroadEn_02389
- DNA Barcode:
- TTCCTTTTAAACTTCACAAGGGCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAIP (10293)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471083
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10293 | TRAIP | TRAF interacting protein | NM_005879.3 | 100% | 100% | |
| 2 | human | 10293 | TRAIP | TRAF interacting protein | XM_011533264.1 | 80.7% | 80.5% | (many diffs) |
| 3 | human | 10293 | TRAIP | TRAF interacting protein | XM_017005526.1 | 78.8% | 78.8% | 408_409ins297 |
| 4 | human | 10293 | TRAIP | TRAF interacting protein | XR_001739979.1 | 67% | 1_110del;993_1086del;1612_2099del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1473
- ORF length:
- 1407
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcc tatccgtgct ctgtgcacta tctgctccga cttcttcgat cactcccgcg 121 acgtggccgc catccactgc ggccacacct tccacttgca gtgcctaatt cagtggtttg 181 agacagcacc aagtcggacc tgcccacagt gccgaatcca ggttggcaaa agaaccatta 241 tcaataagct cttctttgat cttgcccagg aggaggagaa tgtcttggat gcagaattct 301 taaagaatga actggacaat gtcagagccc agctttccca gaaagacaag gagaaacgag 361 acagccaggt catcatcgac actctgcggg atacgctgga agaacgcaat gctactgtgg 421 tatctctgca gcaggccttg ggcaaggccg agatgctgtg ctccacactg aaaaagcaga 481 tgaagtactt agagcagcag caggatgaga ccaaacaagc acaagaggag gcccgccggc 541 tcaggagcaa gatgaagacc atggagcaga ttgagcttct actccagagc cagcgccctg 601 aggtggagga gatgatccga gacatgggtg tgggacagtc agcggtggaa cagctggctg 661 tgtactgtgt gtctctcaag aaagagtacg agaatctaaa agaggcacgg aaggcctcag 721 gggaggtggc tgacaagctg aggaaggatt tgttttcctc cagaagcaag ttgcagacag 781 tctactctga attggatcag gccaagttag aactgaagtc agcccagaag gacttacaga 841 gtgctgacaa ggaaatcatg agcctgaaaa agaagctaac gatgctgcag gaaaccttga 901 acctgccacc agtggccagt gagactgtcg accgcctggt tttagagagc ccagcccctg 961 tggaggtgaa tctgaagcTC CGCCGGCCAT CCTTCCGTGA TGATATTGAT CTCAATGCTA 1021 CCTTTGATGT GGATACTCCC CCAGCCCGGC CCTCCAGCTC CCAGCATGGT TACTACGAAA 1081 AACTTTGCCT AGAGAAGTCA CACTCCCCAA TTCAGGATGT CCCCAAGAAG ATATGCAAAG 1141 GCCCCAGGAA GGAGTCCCAG CTCTCACTGG GTGGCCAGAG CTGTGCAGGA GAGCCAGATG 1201 AGGAACTGGT TGGTGCCTTC CCTATTTTTG TCCGGAATGC CATCCTAGGC CAGAAACAGC 1261 CCAAGAGGCC CAGGTCAGAG TCCTCTTGCA GCAAAGATGT GGTAAGGACA GGCTTCGATG 1321 GGCTCGGTGG CCGGACAAAA TTCATCCAGC CTACTGACAC AGTCATGATC CGCCCATTGC 1381 CTGTTAAGCC CAAGACCAAG GTTAAGCAGA GGGTGAGGGT GAAGACAGTG CCTTCTCTCT 1441 TCCAGGCCAA GCTGGACACC TTCCTGTGGT CGTGCCCAAC TTTCTTGTAC AAAGTGGTTG 1501 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 1561 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATT 1621 CCTTTTAAAC TTCACAAGGG CCACGCGTTA AGTCgacaat caacctctgg attacaaaat 1681 ttgtgaaaga tt