Construct: ORF TRCN0000471237
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015132.3_s317c1
- Derived from:
- ccsbBroadEn_14196
- DNA Barcode:
- CGTTGCCTAACAATATCCCTCCAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FGGY (55277)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471237
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001350796.2 | 99.9% | 99.7% | 908A>G |
| 2 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001673.2 | 99.9% | 99.7% | 908A>G |
| 3 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_024448220.1 | 99.9% | 99.7% | 908A>G |
| 4 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001656.1 | 94.7% | 94.6% | 885_956del;980A>G |
| 5 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001657.2 | 94.7% | 94.6% | 885_956del;980A>G |
| 6 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001659.2 | 94.7% | 94.6% | 885_956del;980A>G |
| 7 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001660.2 | 94.7% | 94.6% | 885_956del;980A>G |
| 8 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001661.2 | 94.7% | 94.6% | 885_956del;980A>G |
| 9 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001662.2 | 94.7% | 94.6% | 885_956del;980A>G |
| 10 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001663.2 | 94.7% | 94.6% | 885_956del;980A>G |
| 11 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001664.2 | 94.7% | 94.6% | 885_956del;980A>G |
| 12 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001350797.2 | 92.3% | 88.4% | (many diffs) |
| 13 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001350792.2 | 88.6% | 88.4% | 1_168del;1076A>G |
| 14 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001350793.2 | 88.6% | 88.4% | 1_168del;1076A>G |
| 15 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001244714.2 | 88.3% | 82% | (many diffs) |
| 16 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001668.1 | 87.5% | 84% | (many diffs) |
| 17 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001669.2 | 87.5% | 84% | (many diffs) |
| 18 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001670.2 | 87.5% | 84% | (many diffs) |
| 19 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001671.1 | 87.5% | 84% | (many diffs) |
| 20 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001350799.2 | 86.2% | 82.3% | 908A>G;1080_1081ins95;1137_1138ins85 |
| 21 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_024448185.1 | 84.5% | 84.3% | 1_168del;1053_1124del;1148A>G |
| 22 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_024448196.1 | 84.5% | 84.3% | 1_168del;1053_1124del;1148A>G |
| 23 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001350795.2 | 84% | 78.2% | (many diffs) |
| 24 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_011541736.3 | 84% | 78.2% | (many diffs) |
| 25 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001655.1 | 84% | 78.2% | (many diffs) |
| 26 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001350798.2 | 81.7% | 78.1% | (many diffs) |
| 27 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001350791.2 | 79.6% | 79.4% | 1_336del;1244A>G |
| 28 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_018291.4 | 79.6% | 79.4% | 1_336del;1244A>G |
| 29 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001645.1 | 79.6% | 79.4% | 1_336del;1244A>G |
| 30 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001646.1 | 79.6% | 79.4% | 1_336del;1244A>G |
| 31 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_024448227.1 | 78% | 77.9% | 0_1ins288;620A>G |
| 32 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_024448229.1 | 78% | 77.9% | 0_1ins288;620A>G |
| 33 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001113411.2 | 76.2% | 76.1% | 1_336del;1221_1292del;1316A>G |
| 34 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001350790.2 | 76.2% | 76.1% | 1_336del;1221_1292del;1316A>G |
| 35 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_011541730.1 | 76.2% | 76.1% | 1_336del;1221_1292del;1316A>G |
| 36 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_011541731.1 | 76.2% | 76.1% | 1_336del;1221_1292del;1316A>G |
| 37 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001643.2 | 76.2% | 76.1% | 1_336del;1221_1292del;1316A>G |
| 38 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_024448176.1 | 76.2% | 76.1% | 1_336del;1221_1292del;1316A>G |
| 39 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001677.1 | 74% | 73.8% | 0_1ins288;597_668del;692A>G |
| 40 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001678.1 | 74% | 73.8% | 0_1ins288;597_668del;692A>G |
| 41 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001350794.2 | 68.7% | 65.7% | (many diffs) |
| 42 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001652.1 | 68.7% | 65.7% | (many diffs) |
| 43 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_024448207.1 | 68.7% | 65.7% | (many diffs) |
| 44 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001649.1 | 65.8% | 62.9% | (many diffs) |
| 45 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XR_001737286.1 | 60.9% | (many diffs) | |
| 46 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XR_001737285.1 | 60.2% | (many diffs) | |
| 47 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XR_001737284.1 | 58.9% | (many diffs) | |
| 48 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NM_001278224.2 | 57.3% | 57.1% | 0_1ins561;347A>G |
| 49 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XR_001737287.1 | 54.1% | (many diffs) | |
| 50 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | NR_103473.2 | 52% | (many diffs) | |
| 51 | human | 55277 | FGGY | FGGY carbohydrate kinase do... | XM_017001679.1 | 45.1% | 44.6% | (many diffs) |
| 52 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_006503474.1 | 88.8% | 92.4% | (many diffs) |
| 53 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | NM_001113412.1 | 70.6% | 73.5% | (many diffs) |
| 54 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_006503461.3 | 70.6% | 73.5% | (many diffs) |
| 55 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_011240633.2 | 69.6% | 72.5% | (many diffs) |
| 56 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_017320432.1 | 69.2% | 71% | (many diffs) |
| 57 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_011240636.1 | 64.8% | 66.7% | (many diffs) |
| 58 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_011240635.1 | 64.4% | 65.3% | (many diffs) |
| 59 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_011240637.2 | 63.9% | 66.4% | (many diffs) |
| 60 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_011240639.2 | 63.8% | 65.7% | (many diffs) |
| 61 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_017320430.1 | 60.6% | 54.8% | (many diffs) |
| 62 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_017320429.1 | 59.7% | 54% | (many diffs) |
| 63 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_006503468.3 | 58% | 53.5% | (many diffs) |
| 64 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_006503472.3 | 57.8% | 54.7% | (many diffs) |
| 65 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_011240644.1 | 57.4% | 53.3% | (many diffs) |
| 66 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_006503470.3 | 57.1% | 53.8% | (many diffs) |
| 67 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_011240643.2 | 57% | 53.9% | (many diffs) |
| 68 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_011240645.1 | 52.2% | 54.2% | (many diffs) |
| 69 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_006503476.1 | 51.3% | 52.8% | (many diffs) |
| 70 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_017320431.1 | 51.3% | 47.9% | (many diffs) |
| 71 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XR_001784213.1 | 44.6% | (many diffs) | |
| 72 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | NM_029347.2 | 43% | 43.1% | (many diffs) |
| 73 | mouse | 75578 | Fggy | FGGY carbohydrate kinase do... | XM_006503475.1 | 42.4% | 42.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1383
- ORF length:
- 1317
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtg gctggaccat cgagcagtca gtcaagttaa caggatcaat gagaccaagc 121 acagtgtcct ccagtacgtc gggggggtga tgtctgtgga aatgcaggcc ccgaaacttc 181 tgtggctgaa agagaacttg agagagattt gctgggataa ggcgggacat ttctttgatc 241 tcccggactt cttatcgtgg aaggcaacag gtgtcacagc acggtctctc tgctccctgg 301 tgtgtaagtg gacatattca gcagagaaag gctgggacga cagtttctgg aaaatgattg 361 gtttggaaga ctttgttgca gataattaca gcaaaatagg aaaccaagtg ctacctcctg 421 gagcttctct tggaaatggg ctcacaccag aggcagcaag agaccttggc cttctccctg 481 ggattgcggt cgcagcttca ctcattgatg cccatgcagg aggactagga gtgattgggg 541 cagatgtgag agggcacggc ctcatctgtg aggggcagcc agtgacgtca cggctggctg 601 tcatctgtgg aacgtcttct tgtcacatgg ggatcagcaa agacccgatt tttgtaccag 661 gcgtctgggg gccttatttc tcagccatgg tacctgggtt ctggctgaat gaaggtggtc 721 agagcgttac tggaaaattg atagaccaca tggtacaagg ccatgctgct tttccagaac 781 tacaagtaaa ggccacagcc agatgccaga gtatatatgc atatttgaac agtcacctgg 841 atctgattaa gaaggctcag cctgtgggtt tccttactgt tgatttacat gtttggccag 901 atttccatgg caaccggTCT CCCTTAGCAG ATCTGACACT AAAGGGCATG GTCACCGGAT 961 TGAAACTGTC TCGGGACCTT GATGATCTTG CCATTCTCTA CCTGGCCACA GTTCAAGCCA 1021 TTGCTTTGGG GACTCGCTTC ATTATAGAAG CCATGGAGGC AGCAGGGCAC TCAATCAGTA 1081 CTCTTTTCCT ATGTGGAGGC CTCAGCAAGA ATCCCCTTTT TGTGCAAATG CATGCGGACA 1141 TTACTGGCAT GCCTGTGGTC CTGTCGCAAG AGGTGGAGTC CGTTCTTGTG GGTGCTGCTG 1201 TTCTGGGTGC CTGTGCCTCA GGGGATTTCG CTTCTGTACA GGAAGCAATG GCAAAAATGA 1261 GCAAAGTTGG GAAAGTTGTG TTCCCGAGAC TACAGGATAA AAAATACTAT GATAAGAAAT 1321 ACCAAGTATT CCTGAAGCTG GTTGAACACC AGAAGGAGTA TTTGGCGATC ATGAATGATG 1381 ACTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 1441 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 1501 GGCTTTATAT ATCTTGTGGA AAGGACGACG TTGCCTAACA ATATCCCTCC ACACGCGTTA 1561 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt