Construct: ORF TRCN0000471332
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001076.1_s317c1
- Derived from:
- ccsbBroadEn_09846
- DNA Barcode:
- AGCCGGGCGATTCTGTATCCGTGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC37A2 (219855)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471332
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219855 | SLC37A2 | solute carrier family 37 me... | NM_198277.3 | 99.9% | 100% | 1245T>C |
| 2 | human | 219855 | SLC37A2 | solute carrier family 37 me... | NM_001145290.2 | 98.4% | 98.4% | (many diffs) |
| 3 | human | 219855 | SLC37A2 | solute carrier family 37 me... | XR_001747788.1 | 48.8% | (many diffs) | |
| 4 | mouse | 56857 | Slc37a2 | solute carrier family 37 (g... | NM_001145960.1 | 84.3% | 87.3% | (many diffs) |
| 5 | mouse | 56857 | Slc37a2 | solute carrier family 37 (g... | NM_020258.4 | 83.3% | 86.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1581
- ORF length:
- 1515
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcg gtcctccctg gctccgggag tctggttctt ccgggccttc tccagggaca 121 gctggttccg aggcctcatc ctgctgctga ccttcctaat ttacgcctgc tatcacatgt 181 ccaggaagcc tatcagtatc gtcaagagcc gtctgcacca gaactgctcg gagcagatca 241 aacccatcaa tgatactcac agtctcaatg acaccatgtg gtgcagctgg gccccatttg 301 acaaggacaa ctataaggag ttactagggg gcgtggacaa cgccttcctc atcgcctatg 361 ccatcggcat gttcatcagt ggggtttttg gggagcggct tccgctccgt tactacctct 421 cagctggaat gctgctcagt ggccttttca cctcgctctt tggcctggga tatttctgga 481 acatccacga gctctggtac tttgtggtca tccaggtctg taatggactc gtccagacca 541 caggctggcc ctctgtggtg acctgtgttg gcaactggtt cgggaagggg aagcgggggt 601 tcatcatggg catctggaat tcccacacat ctgtgggcaa catcctgggc tccctgatcg 661 ccggcatctg ggtgaacggg cagtggggcc tgtcgttcat cgtgcctggc atcattactg 721 ccgtcatggg cgtcatcacc ttcctcttcc tcatcgaaca cccagaagat gtggactgcg 781 cccctcctca gcaccacggt gagccagctg agaaccagga caaccctgag gaccctggga 841 acagtccctg ctctatcagg gagagcggcc ttgagactgt ggccaaatgc tccaaggggc 901 catgcgaaga gcctgctgcc atcagcttct ttggggcgct ccggatccca ggcgtggtcg 961 agttctctct gtgtctgctg tttgccaagc tggtcagtta caccttcctc tactggctgc 1021 ccctctacat cgccaatgtg gctcacttta gtgccaagga ggctggggac ctgtctacac 1081 tcttcgatgt tggtggcatc ataggcggca tcgtggcagg gctcgtctct gactacacca 1141 atggcagggc caccacttgc tgtgtcatgc tcatcttGGC TGCCCCCATG ATGTTCCTGT 1201 ACAACTACAT TGGCCAGGAC GGGATTGCCA GCTCCATAGT GATGCTGATC ATCTGTGGGG 1261 GCCTGGTCAA TGGCCCATAC GCGCTCATCA CCACTGCTGT CTCTGCTGAC CTGGGGACTC 1321 ACAAGAGCCT GAAGGGCAAC GCCAAAGCCC TGTCCACGGT CACGGCCATC ATTGACGGCA 1381 CCGGCTCCAT AGGTGCGGCT CTGGGGCCTC TGCTGGCTGG GCTCATCTCC CCCACGGGCT 1441 GGAACAATGT CTTCTACATG CTCATCTCTG CCGACGTCCT AGCCTGCTTG CTCCTTTGCC 1501 GGTTAGTATA CAAAGAGATC TTGGCCTGGA AGGTGTCCCT GAGCAGAGGC AGCGGCTCTA 1561 GTATGGTCCT AACCCACCAG TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 1621 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 1681 AAAGTATTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAAGCCG GGCGATTCTG 1741 TATCCGTGAA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg tgaaagatt