Construct: ORF TRCN0000471404
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010288.1_s317c1
- Derived from:
- ccsbBroadEn_01119
- DNA Barcode:
- ACGCCTGTCAATATACCCGGCATC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OMP (4975)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471404
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4975 | OMP | olfactory marker protein | NM_006189.1 | 100% | 100% | |
| 2 | mouse | 18378 | Omp | olfactory marker protein | NM_011010.2 | 88.5% | 89.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 555
- ORF length:
- 489
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc ggaggacagg ccgcagcagc cgcagctgga catgccgctg gtcctggacc 121 agggcctgac caggcagatg cggctacgcg tggagagcct gaagcagcgc ggGGAGAAGC 181 GCCAGGATGG GGAGAAGCTG CTGCAGCCAG CGGAGTCTGT GTACCGCCTC AACTTCACCC 241 AGCAGCAGCG GCTACAGTTC GAGCGCTGGA ATGTCGTGCT GGACAAGCCG GGCAAGGTCA 301 CCATCACAGG CACCTCGCAG AACTGGACGC CTGACCTCAC CAACCTCATG ACACGCCAGC 361 TGCTGGACCC CACTGCCATC TTCTGGCGCA AGGAGGACTC GGATGCCATA GATTGGAATG 421 AGGCCGACGC CCTGGAGTTT GGGGAGCGCC TGTCGGACCT GGCCAAGATC CGCAAGGTCA 481 TGTACTTCCT CGTCACCTTT GGCGAGGGTG TGGAGCCCGC CAACCTCAAG GCCTCCGTGG 541 TTTTTAACCA GCTCTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 601 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 661 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA ACGCCTGTCA ATATACCCGG 721 CATCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt