Construct: ORF TRCN0000471474

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004471.1_s317c1
Derived from:
ccsbBroadEn_16012
DNA Barcode:
CTGAAGCACGCGATAGCGACTGAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TSC22D4 (81628)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471474
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81628 TSC22D4 TSC22 domain family member 4 NM_001303043.2 99.9% 100% 1051T>C
2 human 81628 TSC22D4 TSC22 domain family member 4 NM_030935.5 99.9% 100% 1051T>C
3 human 81628 TSC22D4 TSC22 domain family member 4 NR_130118.2 52.3% (many diffs)
4 human 81628 TSC22D4 TSC22 domain family member 4 NR_130119.2 52.2% (many diffs)
5 mouse 78829 Tsc22d4 TSC22 domain family, member 4 NM_023910.6 84% 84.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1251
ORF length:
1185
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag cgggggcaag aagaagagta gtttccaaat caccagcgtc accacggact
121atgagggccc tgggagccca ggggcttcgg atccccctac cccacagccc ccaaccgggc
181ccccgccccg cctgcccaat ggggagccca gccccgatcc ggggggcaag ggcacccccc
241ggaatggctc cccaccacct ggggcccctt cctcccgttt ccgggtggtg aagctgcccc
301acggcctggg agagccttat cgccgcggtc gctggacgtg tgtggatgtt tatgagcgag
361acctggagcc ccacagcttc ggcggactcc tggagggaat tcgaggggcc tcagggggcg
421ccgggggcag atctttggat tccaggttgg agctggccag cctcggcctg ggcgccccca
481ccccaccgtc aggcctgtct cagggcccca cctcctggct ccgtccaccc cccacctctc
541ctggacctca ggcccgctcc ttcactgggg gactgggcca gctggtggtg cccagcaaag
601ccaaggcaga gaaaccccca ctgtcggcct cctcacccca gcagcgcccc ccagagcctg
661agaccggtga gagtgcgggc acatcccggg ctgccacgcc cctgccctct ctgagggtgg
721aagcggaggc tgggggctca ggggccagga cccctccact gtcccggAGG AAAGCTGTAG
781ACATGCGGCT GCGGATGGAG TTGGGTGCTC CAGAAGAGAT GGGGCAGGTG CCCCCACTTG
841ACTCTCGCCC CAGCTCCCCA GCCCTCTACT TCACCCACGA TGCCAGCCTG GTTCACAAAT
901CTCCAGACCC CTTCGGAGCA GTAGCAGCTC AGAAGTTCAG CCTGGCCCAC TCCATGTTGG
961CCATCAGTGG TCACCTAGAC AGCGACGATG ATAGTGGCTC CGGAAGCCTG GTTGGCATTG
1021ACAACAAAAT CGAGCAAGCC ATGGACTTGG TGAAGTCCCA CCTCATGTTT GCGGTCCGGG
1081AGGAGGTGGA GGTGCTGAAG GAGCAGATCC GGGAACTGGC GGAGCGGAAC GCTGCGCTGG
1141AGCAGGAGAA TGGGCTGCTG CGCGCCCTGG CCAGCCCGGA GCAGCTGGCT CAGCTGCCCT
1201CCTCGGGGGT CCCACGGCTT GGGCCCCCTG CGCCCAATGG GCCCTCCGTC TGCCCAACTT
1261TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1321CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1381CTTGTGGAAA GGACGACTGA AGCACGCGAT AGCGACTGAG ACGCGTTAAG TCgacaatca
1441acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)