Transcript: Mouse NM_023910.6

Mus musculus TSC22 domain family, member 4 (Tsc22d4), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Tsc22d4 (78829)
Length:
2349
CDS:
715..1878

Additional Resources:

NCBI RefSeq record:
NM_023910.6
NBCI Gene record:
Tsc22d4 (78829)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_023910.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234141 CATAAGTCTCCAGACCCATTT pLKO_005 1519 CDS 100% 10.800 15.120 N Tsc22d4 n/a
2 TRCN0000086355 TCCATAAGTCTCCAGACCCAT pLKO.1 1517 CDS 100% 2.640 3.696 N Tsc22d4 n/a
3 TRCN0000018132 CACCAGCGTCACCACGGACTA pLKO.1 750 CDS 100% 0.000 0.000 N TSC22D4 n/a
4 TRCN0000234142 CAGCTCGGGAGAGGGTATTTA pLKO_005 2080 3UTR 100% 15.000 10.500 N Tsc22d4 n/a
5 TRCN0000234139 CAAGGTTTGGGAGAGCCTTAT pLKO_005 949 CDS 100% 10.800 7.560 N Tsc22d4 n/a
6 TRCN0000234140 GCTGGCTAGTTTGGGCATAAG pLKO_005 1101 CDS 100% 10.800 7.560 N Tsc22d4 n/a
7 TRCN0000218203 TTGGCATTGACAACAAGATTG pLKO_005 1637 CDS 100% 10.800 7.560 N Tsc22d4 n/a
8 TRCN0000420004 GTGAAGTCCCACCTCATGTTT pLKO_005 1675 CDS 100% 5.625 3.938 N TSC22D4 n/a
9 TRCN0000086357 CCTGGTTGGCATTGACAACAA pLKO.1 1632 CDS 100% 4.950 3.465 N Tsc22d4 n/a
10 TRCN0000086354 CCATAAGTCTCCAGACCCATT pLKO.1 1518 CDS 100% 4.050 2.835 N Tsc22d4 n/a
11 TRCN0000086353 GCCTGGAAAGATTTGGAGGTT pLKO.1 2186 3UTR 100% 2.640 1.584 N Tsc22d4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_023910.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_16012 pDONR223 0% 84% 84.5% None (many diffs) n/a
2 ccsbBroad304_16012 pLX_304 0% 84% 84.5% V5 (many diffs) n/a
3 TRCN0000471474 CTGAAGCACGCGATAGCGACTGAG pLX_317 40.9% 84% 84.5% V5 (many diffs) n/a
4 ccsbBroadEn_04251 pDONR223 100% 83.9% 84.5% None (many diffs) n/a
5 ccsbBroad304_04251 pLX_304 0% 83.9% 84.5% V5 (many diffs) n/a
6 TRCN0000467188 TTTAGCGAGAGCCCCCGCGACACC pLX_317 36.3% 83.9% 84.5% V5 (many diffs) n/a
7 ccsbBroadEn_16011 pDONR223 0% 83.9% 84.5% None (many diffs) n/a
8 TRCN0000470943 CCCGACATCTAGCCTCCTAAAGAT pLX_317 42% 83.9% 84.5% V5 (many diffs) n/a
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