Construct: ORF TRCN0000471493

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004886.1_s317c1
Derived from:
ccsbBroadEn_10062
DNA Barcode:
CACCGGATCCAACTCAATTTTTTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D26 (353149)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471493
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 353149 TBC1D26 TBC1 domain family member 26 NM_178571.4 99.7% 99.2% 617C>T;700G>A
2 human 254272 TBC1D28 TBC1 domain family member 28 NM_001039397.2 76.4% 73.7% (many diffs)
3 human 254272 TBC1D28 TBC1 domain family member 28 XM_011523781.2 70.2% 58.3% (many diffs)
4 human 254272 TBC1D28 TBC1 domain family member 28 XM_024450684.1 70.2% 58.3% (many diffs)
5 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024422.1 63.8% 47.1% (many diffs)
6 human 254272 TBC1D28 TBC1 domain family member 28 XM_011523783.3 60.7% 52.8% (many diffs)
7 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024416.2 60.3% 45.8% (many diffs)
8 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024417.2 60.3% 45.8% (many diffs)
9 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024418.2 60.3% 45.8% (many diffs)
10 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024419.2 60.3% 45.8% (many diffs)
11 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024420.1 60.3% 45.8% (many diffs)
12 human 254272 TBC1D28 TBC1 domain family member 28 XM_017024421.2 60.3% 45.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
816
ORF length:
750
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gatggatggg gacccgtata acctgcctgc ccaggggcaa ggcaatatca
121tcattactaa gtatgagcag ggacaccgag ctggggcagc agtggacttg gggcatgagc
181aggttgatgt cagaaaatac accaataacc tcgggattgt gcatgagatg gagctgcccc
241gcgtcagtgc cctggaggtg aagcaaagac gcaaggaaag taaacgtacc aacaagtggc
301aaaagatgct tgcagactgg acaaaatata ggagcaccaa gaagctgtct caaagagtat
361acaaagtcat tcccctGGCG GTACGGGGCC GGGCGTGGTC ACTTTTGCTA GATATTGACA
421GAATCAAGTC CCAGAACCCA GGCAAATATA AGGTCATGAA GGAGAAGGGC AAGAGGTCCT
481CCAGAATCAT CCACTGCATC CAGCTAGATG TCAGCCACAC CCTGCAGAAA CACATGATGT
541TCATACAAAG ATTCGGAGTC AAGCAGCAGG AATTATGTGA CATCCTCGTG GCCTATTCTG
601CATATAACCC TGAGGTGGGC TACCACAGGG ACCTGAGCCG CATCACTGCC ATCCTCCTCC
661TGTGTCTGCC AGAGGAAGAT GTTTTCTGGG CGCTTACCCA GTTGCTCGCT GGTGAGAGGC
721ACTCCCTGTG GTATTCTACA GCCCAAATAC TGCCTGGCTC GAGAAGCTCC TATCGCACCA
781GGAGCAGGTG CTGCACAAGT CCTTCCCAAA GATCATGCCC AACTTTCTTG TACAAAGTGG
841TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
901CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
961ACACCGGATC CAACTCAATT TTTTGACGCG TTAAGTCgac aatcaacctc tggattacaa
1021aatttgtgaa agatt

Download FASTA (ORF) (Full)