Construct: ORF TRCN0000471494

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012074.1_s317c1
Derived from:
ccsbBroadEn_12531
DNA Barcode:
GCATGTACCGCGGGTTGGTACAGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AHNAK (79026)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471494
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79026 AHNAK AHNAK nucleoprotein NM_024060.4 99.3% 99.3% 7_8insAGG
2 human 79026 AHNAK AHNAK nucleoprotein XM_017018270.1 2.4% 2% (many diffs)
3 human 79026 AHNAK AHNAK nucleoprotein NM_001346445.2 2.3% 2% (many diffs)
4 human 79026 AHNAK AHNAK nucleoprotein NM_001346446.2 2.3% 2% (many diffs)
5 human 79026 AHNAK AHNAK nucleoprotein NM_001620.3 2.3% 2% (many diffs)
6 mouse 66395 Ahnak AHNAK nucleoprotein (desmoy... NM_001039959.2 89.1% 90.6% (many diffs)
7 mouse 66395 Ahnak AHNAK nucleoprotein (desmoy... NM_001286518.1 77.2% 78% (many diffs)
8 mouse 66395 Ahnak AHNAK nucleoprotein (desmoy... NR_104460.1 33.3% (many diffs)
9 mouse 66395 Ahnak AHNAK nucleoprotein (desmoy... XR_877684.3 30.2% (many diffs)
10 mouse 66395 Ahnak AHNAK nucleoprotein (desmoy... XR_877685.3 27.1% (many diffs)
11 mouse 66395 Ahnak AHNAK nucleoprotein (desmoy... XR_877686.3 26.5% (many diffs)
12 mouse 66395 Ahnak AHNAK nucleoprotein (desmoy... XM_006527256.4 4% 3.5% (many diffs)
13 mouse 66395 Ahnak AHNAK nucleoprotein (desmoy... XM_017318272.2 2.9% 2.5% (many diffs)
14 mouse 66395 Ahnak AHNAK nucleoprotein (desmoy... NM_009643.2 2.3% 2.1% (many diffs)
15 mouse 66395 Ahnak AHNAK nucleoprotein (desmoy... XM_006527253.4 2.3% 2.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
516
ORF length:
450
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttagcatgga gaaggaggag gagacaaccc gggagctgct gctgcccaac tggcagggta
121gtggctccca cgggctgacc atcgcccaga gggacgacgg cgtctttgtg caggaggtga
181cgcagaactc ccctgcggcc cgcactgGGG TGGTCAAGGA GGGGGACCAG ATTGTGGGTG
241CCACCATCTA CTTTGACAAC CTGCAGTCGG GTGAGGTGAC CCAGCTGCTG AACACCATGG
301GGCACCACAC GGTGGGCCTG AAGCTGCACC GCAAGGGGGA CCGCTCTCCC GAGCCTGGCC
361AGACCTGGAC CCGTGAAGTC TTCAGCTCCT GCAGCTCTGA AGTGGTTCTG AACACACCAC
421AGCCATCAGC ACTGGAATGC AAAGACCAGA ACAAACAGAA GGAAGCCAGC AGCCAAGCCG
481GGGCAGTTTC AGTCTCCACC CCAAATGCAG GACTGTACCC AACTTTCTTG TACAAAGTGG
541TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
601CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
661AGCATGTACC GCGGGTTGGT ACAGGACGCG TTAAGTCgac aatcaacctc tggattacaa
721aatttgtgaa agatt

Download FASTA (ORF) (Full)