Construct: ORF TRCN0000471505

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009854.1_s317c1
Derived from:
ccsbBroadEn_04088
DNA Barcode:
GCTAAGCCCAAGAACTTAACACGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM118B (79607)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471505
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79607 FAM118B family with sequence simila... NM_024556.4 100% 100%
2 human 79607 FAM118B family with sequence simila... XM_011542977.3 100% 100%
3 human 79607 FAM118B family with sequence simila... NM_001330446.1 99.7% 99.7% 979_980insCAG
4 human 79607 FAM118B family with sequence simila... XM_017018285.2 99.7% 99.7% 979_980insCAG
5 human 79607 FAM118B family with sequence simila... XM_011542978.3 49.3% 45.6% 0_1ins511;55_100del
6 human 79607 FAM118B family with sequence simila... XM_017018286.1 49% 45.3% 0_1ins511;55_100del;514_515insCAG
7 mouse 109229 Fam118b family with sequence simila... NM_001286604.1 91.6% 98% (many diffs)
8 mouse 109229 Fam118b family with sequence simila... NM_194257.2 91.6% 98% (many diffs)
9 mouse 109229 Fam118b family with sequence simila... XM_006509937.3 91.6% 98% (many diffs)
10 mouse 109229 Fam118b family with sequence simila... XM_011242382.2 91.6% 98% (many diffs)
11 mouse 109229 Fam118b family with sequence simila... XM_006509938.2 91.3% 97.7% (many diffs)
12 mouse 109229 Fam118b family with sequence simila... NM_175411.5 71.2% 76.3% (many diffs)
13 mouse 109229 Fam118b family with sequence simila... XM_006509939.2 63% 64.4% (many diffs)
14 mouse 109229 Fam118b family with sequence simila... XM_006509940.3 55.6% 59.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1119
ORF length:
1053
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ttctacaggg agccaggcct ctgatataga cgagattttt ggattcttca
121acgatggcga acctcccacc aaaaagccca ggaagctgct tccaagctta aaaactaaga
181agcctcgaga acttgtgcta gtgattggaa caggcattag tgctgcagtt gcgccccaag
241ttccagccct caaatcctgg aaggggttaa ttcaggcctt actggatgct gccattgatt
301ttgatctttt agaagatgag gagagcaaaa agtttcagaa atgtctccat gaagacaaga
361acctggtcca tgttgcccat gaccttatcc agaaactctc tcctcgtacc agtaatgttc
421gatccacatt tttcaaggac tgtttatatg aagtatttga tgacttggag tcaaagatgg
481aagattctgg aaaacagcta cttcagtcag ttctccacct gatggaaaat ggagccctcg
541tattaactac aaattttgat aatctcttgg aactgtatgc agcagatcag gggaaacagc
601ttgaatccct tgaccTTACT GATGAGAAAA AGGTCCTCGA GTGGGCTCAG GAGAAGCGTA
661AGCTGAGCGT GTTGCATATT CACGGAGTCT ACACCAACCC TAGTGGCATT GTCCTTCATC
721CGGCTGGATA TCAGAACGTG CTCAGGAACA CTGAAGTCAT GAGAGAAATT CAGAAACTCT
781ACGAAAACAA GTCATTTCTT TTCCTGGGCT GTGGCTGGAC TGTGGATGAC ACCACTTTCC
841AGGCCCTTTT CTTGGAGGCT GTCAAGCATA AATCTGACCT AGAACATTTC ATGCTGGTTC
901GGAGAGGAGA CGTAGATGAG TTCAAAAAGC TTCGAGAAAA CATGCTGGAC AAGGGGATTA
961AAGTCATCTC CTATGGAGAT GACTATGCCG ATCTTCCAGA ATATTTCAAG CGACTGACAT
1021GTGAGATCTC CACAAGGGGT ACATCAGCAG GGATGGTGAG AGAAGGTCAG CTAAATGGCT
1081CATCTGCAGC ACACAGTGAA ATAAGAGGCT GTAGTACATG CCCAACTTTC TTGTACAAAG
1141TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1201GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1261ACGAGCTAAG CCCAAGAACT TAACACGTAC GCGTTAAGTC gacaatcaac ctctggatta
1321caaaatttgt gaaagatt

Download FASTA (ORF) (Full)