Construct: ORF TRCN0000471638

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016761.1_s317c1
Derived from:
ccsbBroadEn_12043
DNA Barcode:
CCCTCTGCGTCATTAGCAGCGTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RETREG1 (54463)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471638
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54463 RETREG1 reticulophagy regulator 1 XM_024446117.1 43.7% 43.7% 1_543del
2 human 54463 RETREG1 reticulophagy regulator 1 XM_024446118.1 43.7% 43.7% 1_543del
3 human 54463 RETREG1 reticulophagy regulator 1 NM_019000.4 39.6% 39.6% 1_645del
4 human 54463 RETREG1 reticulophagy regulator 1 XM_011514055.3 38.7% 38.7% 1_669del
5 human 54463 RETREG1 reticulophagy regulator 1 XM_011514054.2 35.6% 35.6% 1_765del
6 human 54463 RETREG1 reticulophagy regulator 1 NM_001034850.2 28.3% 28.3% 1_1068del
7 human 54463 RETREG1 reticulophagy regulator 1 XM_011514053.3 26.2% 26.2% 1_1188del
8 mouse 66270 Retreg1 reticulophagy regulator 1 NM_001277318.1 37.1% 37.8% (many diffs)
9 mouse 66270 Retreg1 reticulophagy regulator 1 NM_001277317.1 34.5% 35.2% (many diffs)
10 mouse 66270 Retreg1 reticulophagy regulator 1 NM_001277315.1 33.5% 34.2% (many diffs)
11 mouse 66270 Retreg1 reticulophagy regulator 1 NM_025459.3 33.5% 34.2% (many diffs)
12 mouse 66270 Retreg1 reticulophagy regulator 1 XM_006520134.3 33.5% 34.2% (many diffs)
13 mouse 66270 Retreg1 reticulophagy regulator 1 XM_017316720.1 33.5% 34.2% (many diffs)
14 mouse 66270 Retreg1 reticulophagy regulator 1 NM_001277316.1 32.8% 33.5% (many diffs)
15 mouse 66270 Retreg1 reticulophagy regulator 1 NM_001034851.2 24.9% 25.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
489
ORF length:
423
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttG TACAAAAAAG
61TTGGCATGGG AACAAATGAT GAAGATGAAT TAAGCCTTGG TTTGCCCACT GAGCTCAAGA
121GAAAGAAGGA ACAGTTGGAC AGTGGTCACA GACCAAGCAA AGAGACGCAA TCAGCAGCTG
181GTCTCACCCT TCCTCTGAAC AGTGACCAAA CCTTTCACCT GATGAGCAAC CTGGCTGGGG
241ATGTTATCAC AGCTGCAGTG ACTGCAGCTA TCAAAGACCA GTTAGAGGGT GTGCAGCAAG
301CACTTTCTCA GGCTGCCCCC ATCCCAGAAG AGGACACAGA CACTGAAGAA GGTGATGACT
361TTGAACTACT TGACCAGTCA GAGCTGGATC AAATTGAGAG TGAATTGGGA CTTACACAAG
421ACCAGGAAGC AGAAGCACAG CAAAATAAGA AGTCTTCAGG TTTCCTTTCA AATCTGCTGG
481GAGGCCATTA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
541CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
601TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACCCTCT GCGTCATTAG CAGCGTTAAC
661GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)