Construct: ORF TRCN0000471726

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002222.1_s317c1
Derived from:
ccsbBroadEn_09356
DNA Barcode:
ACAACCCAAATACTCTGAGTTATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LEMD1 (93273)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471726
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 93273 LEMD1 LEM domain containing 1 NM_001199050.2 99.8% 99.4% 247G>A
2 human 93273 LEMD1 LEM domain containing 1 XM_011510162.2 88.9% 88.6% 247G>A;271_336del
3 human 93273 LEMD1 LEM domain containing 1 XM_011510160.2 86.4% 86.1% 247G>A;271_354del
4 human 93273 LEMD1 LEM domain containing 1 XM_011510161.2 86.4% 86.1% 247G>A;271_354del
5 human 93273 LEMD1 LEM domain containing 1 NM_001199051.2 77.1% 76.2% 82_83ins123;124G>A
6 human 93273 LEMD1 LEM domain containing 1 XM_011510163.2 66.8% 66% 82_83ins123;124G>A;148_231del
7 human 93273 LEMD1 LEM domain containing 1 XM_011510165.2 61.6% 49.2% (many diffs)
8 human 93273 LEMD1 LEM domain containing 1 XM_011510164.2 61.2% 57.3% (many diffs)
9 human 93273 LEMD1 LEM domain containing 1 NM_001001552.5 59.6% 43% 201_202ins142;324_325ins77
10 human 93273 LEMD1 LEM domain containing 1 NR_037583.2 38.1% 1_105del;187_188ins188;461_743del
11 human 93273 LEMD1 LEM domain containing 1 NM_001199052.2 37% 21.8% 82_83ins265;201_202ins77
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
609
ORF length:
543
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt ggatgtgaag tgtctgagtg actgtaaatt gcagaaccaa cttgagaagc
121ttggattttc acctggccca atactacctt cCACCAGAAA GTTGTATGAA AAAAAGTTAG
181TACAGTTGTT GGTCTCACCT CCCTGTGCAC CACCTGTGAT GAATGGACCC AGAGAGCTGG
241ATGGAGCGCA GGACAGTGAT GACAGCGAAG AGCTTAATAT CATTTTGCAA GGAAATATCA
301TACTCTCAAC AAAAAAAAGC AAGAAACTCA AAAAATGGCC TGAGGCTTCC ACCACTAAAC
361GCAAAGCTGT AGATACCTAT TGCTTGGATT ATAAGCCTTC CAAGGGAAGA AGGTGGGCTG
421CAAGAGCACC AAGCACCAGA ATCACATATG GGACTATCAC CAAAGAGAGA GACTACTGCG
481CGGAAGACCA GACTATCGAG AGCTGGAGAG AAGAAGGTTT CCCAGTGGGC TTGAAGCTTG
541CTGTGCTTGG TATTTTCATC ATTGTGGTGT TTGTCTACCT GACTGTGGAA AATAAGTCGC
601TGTTTGGTTA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
661CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
721TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAACAACC CAAATACTCT GAGTTATCAC
781GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)