Construct: ORF TRCN0000471818

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004987.1_s317c1
Derived from:
ccsbBroadEn_02716
DNA Barcode:
TCAATGTATACTGCAGATACCCGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NMNAT2 (23057)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471818
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23057 NMNAT2 nicotinamide nucleotide ade... NM_170706.3 100% 100%
2 human 23057 NMNAT2 nicotinamide nucleotide ade... NM_015039.4 93.2% 90.3% (many diffs)
3 human 23057 NMNAT2 nicotinamide nucleotide ade... XM_024454277.1 79.1% 79.1% 0_1ins189
4 mouse 226518 Nmnat2 nicotinamide nucleotide ade... XM_006529455.3 85.7% 90.7% (many diffs)
5 mouse 226518 Nmnat2 nicotinamide nucleotide ade... NM_175460.3 85% 89.1% (many diffs)
6 mouse 226518 Nmnat2 nicotinamide nucleotide ade... XR_387163.3 17.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
972
ORF length:
906
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga aatccaggaa ctagaggaaa ttcaggcctg ccaggggctc tgggaagtgt
121ttgttactct ctcagaaaga gccagggatt atctgcacaa aactggaagg tttattgtga
181ttggcgggat tgtctcccct gtccacgact cctatggaaa acagggcctc gtgtcaagcc
241ggcaccgtct catcatgtgt cagctggccg tccagaattc tgattggatc agggtggacc
301cttgggagtg ctaccaggac acctggcaga cgacctgcag cgtgttggaa caccaccggg
361acctcatgaa gagggtgact ggctgcatcc tctccaatgt caacacacct tccatgacac
421ctgtgatcgg acagccacaa aacgagaccc cccagcccat ttaccagaac agcaacgtgg
481ccaccaagcc cactgcagcc aagatcttgg ggaaggtggg agaaagccTC AGCCGGATCT
541GCTGTGTCCG CCCGCCGGTG GAGCGTTTCA CCTTTGTAGA TGAGAATGCC AATCTGGGCA
601CGGTGATGCG GTATGAAGAG ATTGAGCTAC GGATCCTGCT GCTGTGTGGT AGTGACCTGC
661TGGAGTCCTT CTGCATCCCA GGGCTCTGGA ACGAGGCAGA TATGGAGGTG ATTGTTGGTG
721ACTTTGGGAT TGTGGTGGTG CCCCGGGATG CAGCCGACAC AGACCGAATC ATGAATCACT
781CCTCAATACT CCGCAAATAC AAAAACAACA TCATGGTGGT GAAGGATGAC ATCAACCATC
841CCATGTCTGT TGTCAGCTCA ACCAAGAGCA GGCTGGCCCT GCAGCATGGG GACGGCCATG
901TTGTGGATTA CCTGTCCCAG CCGGTCATCG ACTACATCCT CAAAAGCCAG CTGTACATCA
961ATGCCTCCGG CTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1021ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1081CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATCA ATGTATACTG CAGATACCCG
1141AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)