Construct: ORF TRCN0000471858

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008534.1_s317c1
Derived from:
ccsbBroadEn_09047
DNA Barcode:
TGGAAACACGTAGACCCTTGCCTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
THAP7 (80764)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471858
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80764 THAP7 THAP domain containing 7 NM_001008695.1 99.8% 99.6% 343G>C
2 human 80764 THAP7 THAP domain containing 7 NM_030573.3 99.8% 99.6% 343G>C
3 mouse 69009 Thap7 THAP domain containing 7 NM_026909.2 89.1% 93.2% (many diffs)
4 mouse 69009 Thap7 THAP domain containing 7 XM_006522511.3 89.1% 93.2% (many diffs)
5 mouse 69009 Thap7 THAP domain containing 7 XM_006522512.3 75.5% 79.2% (many diffs)
6 mouse 69009 Thap7 THAP domain containing 7 XM_006522513.3 73.4% 77% (many diffs)
7 mouse 69009 Thap7 THAP domain containing 7 XM_011246003.2 60.3% 62.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
993
ORF length:
927
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc gcgtcactgc tccgccgccg gctgctgcac acgggacacg cgcgagacgc
121gcaaccgcgg catctccttc cacagacttc ccaagaagga caacccgagg cgaggcttgt
181ggctggccaa ctgccagcgg ctggacccca gcggccaggg cctgtgggac ccggcatccg
241agtacatcta cttctgctcc aaacactttg aggaggactg ctttgagctg gtgggaatca
301gtggatatca caggctaaag gagggggcag tccccaccat atttgagtct ttctccaagt
361tgcgccggac aaccaagacc aaaggacaca gttacccacc tggcccccct gaagtcagcc
421ggctcagacg atgcaggaag cgctgctccg agggccgagg gcccacaact ccattttctc
481cacctccacc tgctgatgtc acctgctttc ctgtggaaga ggcctcagca cctgccactt
541tgccggcctc cccagctggg aggctggagc ctggccttag cagccccttt tcagacctac
601tgggccccTT GGGTGCCCAG GCAGATGAAG CAGGCTGCAG CGCCCAGCCT TCACCAGAGC
661GGCAGCCCTC CCCTCTCGAA CCACGGCCAG TCTCCCCCTC AGCGTATATG CTGCGCCTGC
721CCCCACCCGC CGGAGCCTAC ATCCAGAATG AACACAGCTA CCAGGTGGGC AGCGCCTTAC
781TCTGGAAGCG GCGAGCCGAG GCAGCCCTTG ATGCCCTTGA CAAGGCCCAG CGCCAGCTGC
841AGGCCTGCAA GCGGCGGGAG CAGCGGCTGC GGTTGAGACT GACCAAGCTG CAGCAGGAGC
901GGGCACGGGA GAAGCGGGCA CAGGCAGATG CCCGCCAGAC TCTGAAGGAG CATGTGCAGG
961ACTTTGCCAT GCAGCTGAGC AGCAGCATGG CCTGCCCAAC TTTCTTGTAC AAAGTGGTTG
1021ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1081GTCCGTAACT TGAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATGG
1141AAACACGTAG ACCCTTGCCT CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt
1201tgtgaaagat t

Download FASTA (ORF) (Full)