Construct: ORF TRCN0000471879

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004624.2_s317c1
Derived from:
ccsbBroadEn_02350
DNA Barcode:
ATATGCAGCTGCTAATGATAACTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NME6 (10201)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471879
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10201 NME6 NME/NM23 nucleoside diphosp... NM_005793.4 100% 100%
2 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_017005513.2 97.9% 96.9% 4_5insCCCAGAATCTGG
3 human 10201 NME6 NME/NM23 nucleoside diphosp... NM_001308426.1 95.8% 95.8% 0_1ins24
4 human 10201 NME6 NME/NM23 nucleoside diphosp... NM_001308427.1 95.8% 95.8% 0_1ins24
5 human 10201 NME6 NME/NM23 nucleoside diphosp... NM_001308428.1 95.8% 95.8% 0_1ins24
6 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_017005514.2 95.8% 95.8% 0_1ins24
7 human 10201 NME6 NME/NM23 nucleoside diphosp... NM_001308430.1 88.1% 41.2% 215_216ins40;513_514ins29
8 human 10201 NME6 NME/NM23 nucleoside diphosp... NM_001308431.1 84% 37.7% 0_1ins24;191_192ins40;489_490ins29
9 human 10201 NME6 NME/NM23 nucleoside diphosp... NM_001308433.1 84% 37.7% 0_1ins24;191_192ins40;489_490ins29
10 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_017005515.1 84% 37.7% 0_1ins24;191_192ins40;489_490ins29
11 human 10201 NME6 NME/NM23 nucleoside diphosp... NM_001308434.1 72.6% 72.6% 0_1ins159
12 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_017005516.2 66.1% 39.2% (many diffs)
13 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_017005511.2 62% 35.4% (many diffs)
14 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_024453300.1 61.9% 50.5% (many diffs)
15 human 10201 NME6 NME/NM23 nucleoside diphosp... NM_001308435.1 61.3% 61.3% 0_1ins24;192_193ins201
16 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_024453301.1 60.5% 48.4% (many diffs)
17 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_024453297.1 59.1% 47.7% (many diffs)
18 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_024453302.1 59.1% 47.7% (many diffs)
19 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_024453303.1 59.1% 47.7% (many diffs)
20 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_024453304.1 59.1% 47.7% (many diffs)
21 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_024453305.1 59.1% 47.7% (many diffs)
22 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_024453306.1 59.1% 47.7% (many diffs)
23 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_017005517.1 57.3% 56.7% (many diffs)
24 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_017005512.2 57.2% 42.6% (many diffs)
25 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_017005518.2 57.2% 57.2% 0_1ins249
26 human 10201 NME6 NME/NM23 nucleoside diphosp... XM_024453299.1 54.8% 45% (many diffs)
27 mouse 54369 Nme6 NME/NM23 nucleoside diphosp... NM_018757.1 82.6% 84.2% (many diffs)
28 mouse 54369 Nme6 NME/NM23 nucleoside diphosp... XM_006512197.1 82.6% 84.2% (many diffs)
29 mouse 54369 Nme6 NME/NM23 nucleoside diphosp... XM_006512198.3 82.6% 84.2% (many diffs)
30 mouse 54369 Nme6 NME/NM23 nucleoside diphosp... XM_006512199.3 82.6% 84.2% (many diffs)
31 mouse 54369 Nme6 NME/NM23 nucleoside diphosp... XM_006512200.2 52.7% 52.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
648
ORF length:
582
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac ccagaatctg gggagtgaga tggcctcaat cttgcgaagc cctcaggctc
121tccagctcac tctagccctG ATCAAGCCTG ACGCAGTCGC CCATCCACTG ATTCTGGAGG
181CTGTTCATCA GCAGATTCTA AGCAACAAGT TCCTGATTGT ACGAATGAGA GAACTACTGT
241GGAGAAAGGA AGATTGCCAG AGGTTTTACC GAGAGCATGA AGGGCGTTTT TTCTATCAGA
301GGCTGGTGGA GTTCATGGCC AGCGGGCCAA TCCGAGCCTA CATCCTTGCC CACAAGGATG
361CCATCCAGCT CTGGAGGACG CTCATGGGAC CCACCAGAGT GTTCCGAGCA CGCCATGTGG
421CCCCAGATTC TATCCGTGGG AGTTTCGGCC TCACTGACAC CCGCAACACC ACCCATGGTT
481CGGACTCTGT GGTTTCAGCC AGCAGAGAGA TTGCAGCCTT CTTCCCTGAC TTCAGTGAAC
541AGCGCTGGTA TGAGGAGGAA GAGCCCCAGT TGCGCTGTGG CCCTGTGTGC TATAGCCCAG
601AGGGAGGTGT CCACTATGTA GCTGGAACAG GAGGCCTAGG ACCAGCCTGC CCAACTTTCT
661TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
721CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
781GTGGAAAGGA CGAATATGCA GCTGCTAATG ATAACTAACG CGTTAAGTCg acaatcaacc
841tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)