Construct: ORF TRCN0000471972
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015843.1_s317c1
- Derived from:
- ccsbBroadEn_12385
- DNA Barcode:
- AGAATCGATCAATTGGAACCGTCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DHX37 (57647)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471972
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57647 | DHX37 | DEAH-box helicase 37 | XR_001748820.1 | 2.4% | 1_3654del;3766_4545del | |
| 2 | human | 57647 | DHX37 | DEAH-box helicase 37 | XR_001748819.1 | 2.4% | 1_3701del;3813_4592del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 314
- ORF end:
- 425
- ORF length:
- 111
- Sequence:
-
1 GTCGCTTCAT GTGACTCCAC GGAGTACCGG GCGCCGTCCA GGCACCTCGA TTAGTTCTCG 61 AGCTTTTGGA GTACGTCGTC TTTAGGTTGG GGGGAGGGGT TTTATGCGAT GGAGTTTCCC 121 CACACTGAGT GGGTGGAGAC TGAAGTTAGG CCAGCTTGGC ACTTGATGTA ATTCTCCTTG 181 GAATTTGCCC TTTTTGAGTT TGGATCTTGG TTCATTCTCA AGCCTCAGAC AGTGGTTCAA 241 AGTTTTTTTC TTCCATTTCA GGTGTCGTGA GGCTAGCATC GATTGATCAA CAAGTTTGTA 301 CAAAAAAGTT GGCATGGGCT TCGTGGCCTG CTCTCAGGAA GTGGGTCAAG CCCTGGGAAC 361 CCTCATCCAT GAGAGCTCGA TCCCGTATGA AGGGTGCTGC CGCCCGTGCC ATCTGGCCCG 421 GGGGTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT 481 CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC 541 TTGGCTTTAT ATATCTTGTG GAAAGGACGA AGAATCGATC AATTGGAACC GTCCACGCGT 601 TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt