Construct: ORF TRCN0000472049
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011213.1_s317c1
- Derived from:
- ccsbBroadEn_12796
- DNA Barcode:
- GTTTGGATTGACCCCTTGCGAGGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RHBDD1 (84236)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472049
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001167608.3 | 32.9% | 31.7% | (many diffs) |
| 2 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001349069.1 | 32.9% | 31.7% | (many diffs) |
| 3 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001349071.2 | 32.9% | 31.7% | (many diffs) |
| 4 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001349072.2 | 32.9% | 31.7% | (many diffs) |
| 5 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_032276.5 | 32.9% | 31.7% | (many diffs) |
| 6 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005083.1 | 32.9% | 31.7% | (many diffs) |
| 7 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005084.2 | 32.9% | 31.7% | (many diffs) |
| 8 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005085.2 | 32.9% | 31.7% | (many diffs) |
| 9 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005086.2 | 32.9% | 31.7% | (many diffs) |
| 10 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005087.2 | 32.9% | 31.7% | (many diffs) |
| 11 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005088.1 | 32.9% | 31.7% | (many diffs) |
| 12 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005090.2 | 32.9% | 31.7% | (many diffs) |
| 13 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005092.2 | 32.9% | 31.7% | (many diffs) |
| 14 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005093.1 | 27.2% | 23% | (many diffs) |
| 15 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005094.1 | 27.2% | 23% | (many diffs) |
| 16 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005095.1 | 26.9% | 23.3% | (many diffs) |
| 17 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738990.2 | 10.5% | (many diffs) | |
| 18 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738988.2 | 10.5% | (many diffs) | |
| 19 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738989.2 | 10.1% | (many diffs) | |
| 20 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738986.2 | 10% | (many diffs) | |
| 21 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738984.2 | 9.6% | (many diffs) | |
| 22 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738991.2 | 7% | (many diffs) | |
| 23 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738987.2 | 6.9% | (many diffs) | |
| 24 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738985.2 | 6.5% | (many diffs) | |
| 25 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738983.2 | 6.5% | (many diffs) | |
| 26 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738982.2 | 5.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 408
- ORF length:
- 318
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGTA TGCCTGTTTT TCTTTTTAAA CCGAAAGGCG 121 GTTTTTCCTC CAGTGTTGGT TACCCAGGAC GGCAATACTA CTTTAATAGT TCAGGCAGCT 181 CTGGATATCA GGATTATTAT CCGCATGGCA GGCCAGATCA CTATGAAGAA GCACCCAGGA 241 ACTATGACAC GTACACAGCA GGACTGAGTG AAGAAGAACA GCTCGAGAGA GCATTACAAG 301 CCAGCCTCTG GGACCGAGGA AATACCAGAA ATAGCCCACC ACCCTACGGG TTTCATCTCT 361 CACCAGAAGA AATGAGGAGA CAGCGGCTTC ACAGATTCGA TAGCCAGTGC CCAATTTTCT 421 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 481 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 541 GTGGAAAGGA CGAGTTTGGA TTGACCCCTT GCGAGGAACG CGTTAAGTCg acaatcaacc 601 tctggattac aaaatttgtg aaagatt