Construct: ORF TRCN0000472060

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007258.1_s317c1
Derived from:
ccsbBroadEn_11686
DNA Barcode:
CCATCTATGTTCCGCCATTTCTCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZC3H3 (23144)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472060
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23144 ZC3H3 zinc finger CCCH-type conta... NM_015117.3 34.3% 33.4% (many diffs)
2 human 23144 ZC3H3 zinc finger CCCH-type conta... XM_006716536.3 32.2% 31.3% (many diffs)
3 human 23144 ZC3H3 zinc finger CCCH-type conta... XM_017013248.1 30.2% 29.4% (many diffs)
4 human 23144 ZC3H3 zinc finger CCCH-type conta... XM_017013249.1 30.2% 29.4% (many diffs)
5 human 23144 ZC3H3 zinc finger CCCH-type conta... XM_011516943.2 15.7% 14.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1071
ORF length:
1005
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaatag
61ttggcatgga gccaggagga gagcccacag gtgctaaaga gagcagtacc ctgatggagt
121cccttgcagg ccggctggat cctgcaggca gctgtagccg ttccctggcc agccgggcag
181tgcagcgcag cctggccatc atccggcagg cgcggcagcg cagggagaag aggaaggagt
241actgcatgta ctacaaccgc ttcggcaggt gcaaccgtgg cgagcgctgc ccctacatcc
301acgatcccga gaaggtggcc gtgtgcacca ggtttgtccg gggcacctgc aagaaaacgg
361atgggacctg ccccttctcc caccatgtgt ccaaggagaa gatgccggtg tgctcctact
421tcctgaaggg catctgcagc aacagcaact gtccctatag ccacgtgtac gtgtcccgca
481aggccgaggt ctgcagcgac ttcctcaaag gctactgccc cctgggtgca aagtgcaaga
541agaaacacac gctgctgtgc cccgactttg cccgcagggg ggcgtgtccc cgcggcgccc
601agtgccagct gctccaccgt acccagaaac gccacagtcg gcgggcagcc acgTCCCCCG
661CCCCAGGGCC CAGCGACGCA ACCGCCAGGA GCAGGGTCTC GGCCAGCCAC GGGCCCAGGA
721AGCCTTCAGC ATCCCAGCGC CCCACCAGGC AGACGCCCAG CTCGGCTGCC CTCACTGCGG
781CTGCCGTGGC TGCACCTCCC CACTGCCCAG GGGGGTCAGC CTCTCCCTCA TCCTCGAAGG
841CTTCCTCCTC CTCCTCCTCC TCCTCATCCC CTCCCGCTTC CTTGGACCAC GAGGCACCAT
901CTCTCCAGGA GGCTGCCTTA GCAGCAGCGT GCTCCAACAG GCTCTGCAAG CTGCCTTCCT
961TCATCTCCCT GCAGTCCTCG CCGAGCCCAG GAGCCCAGCC CAGGGTCCGG GCCCCTAGGG
1021CCCCCCTCAC CAAGGACTCA GGGAAGCCTC TGCACATCAA ACCACGTCTG TGCCCAACTT
1081TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1141CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1201CTTGTGGAAA GGACGACCAT CTATGTTCCG CCATTTCTCG ACGCGTTAAG TCgacaatca
1261acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)