Construct: ORF TRCN0000472241

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016626.1_s317c1
Derived from:
ccsbBroadEn_14356
DNA Barcode:
AAACTTCGACTGGCCTCAATTTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC2A13 (114134)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472241
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114134 SLC2A13 solute carrier family 2 mem... NM_052885.4 97% 97% 1_57del
2 human 114134 SLC2A13 solute carrier family 2 mem... XM_011537847.2 90.5% 90.5% 1_57del;1316_1317ins126
3 human 114134 SLC2A13 solute carrier family 2 mem... XM_017018764.1 72.9% 72.9% 0_1ins510
4 human 114134 SLC2A13 solute carrier family 2 mem... XM_017018765.1 72.9% 72.9% 0_1ins510
5 human 114134 SLC2A13 solute carrier family 2 mem... XM_011537849.2 65.2% 65.2% (many diffs)
6 human 114134 SLC2A13 solute carrier family 2 mem... XM_011537850.3 65.1% 64.7% (many diffs)
7 human 114134 SLC2A13 solute carrier family 2 mem... XM_017018766.1 64.8% 64.8% 0_1ins663
8 human 114134 SLC2A13 solute carrier family 2 mem... XR_001748568.1 63.6% 1_334del;1722_1811del;1895_1896ins416
9 human 114134 SLC2A13 solute carrier family 2 mem... XR_001748567.2 25.1% (many diffs)
10 mouse 239606 Slc2a13 solute carrier family 2 (fa... NM_001033633.3 81.2% 85.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1956
ORF length:
1887
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggcgagcgg cgcaggaagc agccggagcc ggacgcggcg agcgcggccg
121gggagtgcag cctcctggct gccgccgaat cgagcaccag cctgcagagc gcgggcgcgg
181gcggcggcgg cgtcggggac ctggagcgcg cggcgcggcg gcagttccag caggacgaga
241cccccgcctt cgtgtacgtg gtggccgtct tctccgcgct gggcggcttc ctgtttggct
301atgacaccgg ggtggtgtca ggggccatgc tgctgctcaa gcggcagctc agtctggacg
361cgctgtggca ggagctgctg gtgtccagca cggtgggggc ggctgccgtc tcggcgctgg
421ccggaggcgc cctcaacggc gtcttcggcc gccgcgctgc catcctcctg gccagtgccc
481tcttcaccgc cggctccgcg gtgctggctg cggccaacaa caaggagaca ctgctcgccg
541gccgcctggt cgtgggactc ggcatcggca ttgcttctat gacagtgcca gtgtacattg
601cggaggtctc accacccaat ttaagaggcc gattagtcac cattaatacc ctcttcatca
661caggagggca gttctttgca agtgttgttg atggagcctt cagttatctc cagaaggatg
721gatggaggta catgttggga cttgcagcag ttccggcggt tatacagttt tttggctttc
781tctttttgcc tgaaagccct cgatggctta ttcagaaagg acagactcag aaggcccgta
841gaattttatc tcagatgcgt ggtaaccaga ccattgatga ggaatatgat agcatcaaaa
901acaacattga agaggaggaa aaagaggttg gctcagctgg acctgtgatc tgcagaatgc
961tgagttatcc cccaactcgc cgagctttaa ttgtgggttg tggcctacaa atgttccagc
1021agctctcagg cattaacacc atcatgtact acagtgcaac cattctgcag atgtctggtg
1081ttgaagatga tagacttgca atatggctgg cttcagttac agccttcaca aatttcattt
1141tcacacttgt gggagtctgg cttgttgaga aggtgggccg cagaaagctt acctttggta
1201gtttagcagg taccaccgta gcactcatta ttcttgcctt gggatttgtg ctatcagccc
1261aagtttcccc acgcatcact tttaagccaa tagctccgtc aggtcagaac gccacttgca
1321caagatacag ttactgtaat gaatgtatgt tggatccaga ctgcggtttc tgctacaaga
1381tgaacaaatc aactgtcatt gactcctcct gtgttccagt taataaagca tctacaaatg
1441aggcagcctg gggcaggtgt gaaaatgaaa ccaagttcaa aacagaagat atattttggg
1501cttacaattt ctgccctact ccatactcct ggactgcact tctgggCCTT ATTTTATATC
1561TTGTCTTCTT TGCACCTGGA ATGGGACCAA TGCCTTGGAC TGTGAATTCT GAAATATATC
1621CCCTTTGGGC AAGAAGTACA GGAAATGCAT GTTCATCTGG AATAAACTGG ATTTTCAATG
1681TCCTGGTTTC ACTAACATTT TTACACACAG CAGAGTATCT TACATACTAT GGAGCTTTCT
1741TCCTCTATGC TGGATTTGCT GCTGTGGGAC TCCTTTTCAT CTATGGCTGT CTTCCTGAGA
1801CCAAAGGCAA AAAATTAGAG GAAATTGAAT CACTCTTTGA CAACAGGCTA TGTACATGTG
1861GCACTTCAGA TTCTGATGAA GGGAGATATA TTGAATATAT TCGGGTAAAG GGAAGTAACT
1921ATCATCTTTC TGACAATGAT GCTTCTGATG TGGAATTGCC AACTTTCTTG TACAAAGTGG
1981TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
2041CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
2101AAAACTTCGA CTGGCCTCAA TTTTTACGCG TTAAGTCgac aatcaacctc tggattacaa
2161aatttgtgaa agatt

Download FASTA (ORF) (Full)