Construct: ORF TRCN0000472244

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007462.1_s317c1
Derived from:
ccsbBroadEn_13392
DNA Barcode:
CTTCAACATATCCTGTAATCCCTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPATA24 (202051)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472244
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 202051 SPATA24 spermatogenesis associated 24 XM_011543254.2 77% 69.9% (many diffs)
2 human 202051 SPATA24 spermatogenesis associated 24 NM_194296.1 75.9% 65.2% (many diffs)
3 human 202051 SPATA24 spermatogenesis associated 24 XM_005271916.4 39.9% 34.6% (many diffs)
4 human 202051 SPATA24 spermatogenesis associated 24 XM_011543252.2 30.6% 25.1% (many diffs)
5 human 202051 SPATA24 spermatogenesis associated 24 XM_011543253.2 30.6% 25.1% (many diffs)
6 mouse 71242 Spata24 spermatogenesis associated 24 NM_027733.5 86.8% 82.4% (many diffs)
7 mouse 71242 Spata24 spermatogenesis associated 24 NM_029485.2 69.3% 64% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
630
ORF length:
564
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gacgcccctc gggtggtcga aggcggggtc aggatctgtg tgtctcgctt
121tagatcaact gcgggacgtg attgagTCTC AGGAGGAACT AATCCACCAG CTGAGGAACG
181TGATGGTTCT CCAGGACGAA AATTTTGTCA GTAAAGAAGA GTTCCAGGCA GTGGAGAAGA
241AGCTGGTGGA AGAGAAAGCT GCCCATGCCA AAACCAAGGT CCTCCTGGCC AAGGAAGAGG
301AGAAGTTACA GTTTGCCCTC GGAGAGGTAG AGGTGCTATC CAAGCAGCTG GAGAAAGAGA
361AGCTGGCCTT TGAAAAAGCG CTCTCCAGTG TCAAGAGCAA AGTCCTTCAG GAGTCCAGCA
421AGAAGGACCA GCTCATCACC AAGTGCAATG GTAGGCGGGA GGCCCGTGCT CTCCACCACG
481GTTATATAAA CGGGCTCTTT CCTAACCACC CAGTGCCTGT GTCAAAGGCA GGGTTTCACT
541CTAACACCTG TCCCCAGCTG AGGATACAGG CAGGCCCGGG TGGGCCACAC CTTCGAAAAG
601GCCTTAAGGG ACCAGGCAGG CCACGGAAAT GCCCAACTTT CTTGTACAAA GTGGTTGATA
661TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
721CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGACTTCA
781ACATATCCTG TAATCCCTTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
841tgaaagatt

Download FASTA (ORF) (Full)