Construct: ORF TRCN0000472304
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015988.1_s317c1
- Derived from:
- ccsbBroadEn_13339
- DNA Barcode:
- ATGATCTGCCCAAGATAGAGCTCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTLL9 (164395)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472304
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 164395 | TTLL9 | tubulin tyrosine ligase like 9 | NM_001008409.4 | 46.1% | 39.4% | (many diffs) |
| 2 | human | 164395 | TTLL9 | tubulin tyrosine ligase like 9 | NM_001367620.1 | 41.8% | 23.4% | (many diffs) |
| 3 | human | 164395 | TTLL9 | tubulin tyrosine ligase like 9 | NR_160277.1 | 31.5% | 1_118del;752_948del;1006_2187del | |
| 4 | human | 164395 | TTLL9 | tubulin tyrosine ligase like 9 | NR_148010.2 | 28.4% | 1_553del;1244_2425del | |
| 5 | human | 164395 | TTLL9 | tubulin tyrosine ligase like 9 | NR_160276.1 | 28.4% | (many diffs) | |
| 6 | human | 164395 | TTLL9 | tubulin tyrosine ligase like 9 | NR_148012.2 | 25.1% | (many diffs) | |
| 7 | human | 164395 | TTLL9 | tubulin tyrosine ligase like 9 | NR_148014.2 | 23.9% | (many diffs) | |
| 8 | human | 164395 | TTLL9 | tubulin tyrosine ligase like 9 | NR_148013.2 | 23% | (many diffs) | |
| 9 | human | 164395 | TTLL9 | tubulin tyrosine ligase like 9 | NR_134519.3 | 20.5% | (many diffs) | |
| 10 | human | 164395 | TTLL9 | tubulin tyrosine ligase like 9 | NR_148011.2 | 17.3% | (many diffs) | |
| 11 | mouse | 74711 | Ttll9 | tubulin tyrosine ligase-lik... | XM_011239822.2 | 47.5% | 46% | (many diffs) |
| 12 | mouse | 74711 | Ttll9 | tubulin tyrosine ligase-lik... | XM_011239821.2 | 45.3% | 43.9% | (many diffs) |
| 13 | mouse | 74711 | Ttll9 | tubulin tyrosine ligase-lik... | NM_001083618.1 | 44.2% | 42.9% | (many diffs) |
| 14 | mouse | 74711 | Ttll9 | tubulin tyrosine ligase-lik... | NM_029064.2 | 43.9% | 42.7% | (many diffs) |
| 15 | mouse | 74711 | Ttll9 | tubulin tyrosine ligase-lik... | XM_006500320.1 | 34.8% | 32.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 759
- ORF length:
- 690
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaacacactc atggacgtcc ttcgccacag gccaggatgg gtggaagtga 121 aggacgaagg ggagtgggat ttctactggt gtgacgtcag ctggctccgg gagaacttcg 181 accacaccta catggatgaa catgtgcgga tcagtcactt ccggaaccac tatgagctga 241 cccggaagaa ctacatggtg aagaaccTGA AGCGGTTCCG GAAGCAGCTG GAGCGTGAGG 301 CAGGAAAGCT GGAGGCAGCC AAGTGTGACT TCTTCCCCAA AACCTTTGAG ATGCCTTGCG 361 AGTACCACCT GTTTGTAGAG GAGTTTCGCA AAAACCCAGG AATCACCTGG ATCATGAAGC 421 CTGACACAAG AAGCTCTGAC GACCAGAAAG ATGATATTCC CGTGGAGAAC TATGTGGCTC 481 AGCGTTACAT TGAAAATCCT TACCTGATAG GAGGCCGCAA GTTTGACCTG CGTGTCTATG 541 TGCTGGTGAT GTCGTACATC CCGCTGCGGG CCTGGCTCTA CCGGGATGGC TTTGCCCGAT 601 TCTCCAACAC CCGCTTCACA CTGAACAGCA TTGATGACCA GTATGTTCAC CTCACCAACG 661 TGGCTGTGCA AAAAACATCT CCCGACTACC ACCCAAAGAA GGTGGCTCCT GGAGGTCAAT 721 GCGTCCCCAT CACTGACAGC CAGCAGCCAG GAAGACTATT GCCAACTTTC TTGTACAAAG 781 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 841 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 901 ACGAATGATC TGCCCAAGAT AGAGCTCGAC GCGTTAAGTC gacaatcaac ctctggatta 961 caaaatttgt gaaagatt