Construct: ORF TRCN0000472398

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007598.2_s317c1
Derived from:
ccsbBroadEn_01291
DNA Barcode:
TATATCCATGATGTCTATAAATAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAP2K6 (5608)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472398
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5608 MAP2K6 mitogen-activated protein k... NM_002758.4 100% 100%
2 human 5608 MAP2K6 mitogen-activated protein k... XM_011525026.2 98.2% 97.6% (many diffs)
3 human 5608 MAP2K6 mitogen-activated protein k... NM_001330450.2 83.2% 83.2% 0_1ins168
4 human 5608 MAP2K6 mitogen-activated protein k... XM_005257516.2 83.2% 83.2% 0_1ins168
5 human 5608 MAP2K6 mitogen-activated protein k... XM_006721975.3 83.2% 83.2% 0_1ins168
6 human 5608 MAP2K6 mitogen-activated protein k... XM_011525027.3 83.2% 83.2% 0_1ins168
7 mouse 26399 Map2k6 mitogen-activated protein k... NM_011943.2 91% 97.9% (many diffs)
8 mouse 26399 Map2k6 mitogen-activated protein k... XM_011249034.2 81.2% 86% (many diffs)
9 mouse 26399 Map2k6 mitogen-activated protein k... XM_006533377.3 71.5% 77.5% (many diffs)
10 mouse 26399 Map2k6 mitogen-activated protein k... XM_006533378.3 71.5% 77.5% (many diffs)
11 mouse 26399 Map2k6 mitogen-activated protein k... XM_011249035.2 71.5% 77.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1068
ORF length:
1002
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc tcagtcgaaa ggcaagaagc gaaaccctgg ccttaaaatt ccaaaagaag
121catttgaaca acctcagacc agttccacac cacctcgaga tttagactcc aaggcttgca
181tttctattgg aaatcagaac tttgaggtga aggcagatga cctggagcct ataatggaac
241tgggacgagg tgcgtacggg gtggtggaga agatgcggca cgtgcccagc gggcagatca
301tggcagtgaa gcggatccga gccacagtaa atagccagga acagaaacgg ctactgatgg
361atttggatat ttccatgagg acggtggact gtccattcac tgtcaccttt tatggcgcac
421tgtttcggga gggtgatgtg tggatctgca tggagctcat ggatacatca ctagataaat
481tctacaaaca agttattgat aaaggccaga caattccaga ggacatctta gggaaaatag
541cagtttctat tgtaaaagca ttagaacatt tacatagtaa gctgtctgtc attcacagag
601acgtcaagcc ttctaatgta ctcatcaatg ctctcggtca agtgaagatg tgcgattttg
661gaatcagtgg ctacttggtg gactctgttg cTAAAACAAT TGATGCAGGT TGCAAACCAT
721ACATGGCCCC TGAAAGAATA AACCCAGAGC TCAACCAGAA GGGATACAGT GTGAAGTCTG
781ACATTTGGAG TCTGGGCATC ACGATGATTG AGTTGGCCAT CCTTCGATTT CCCTATGATT
841CATGGGGAAC TCCATTTCAG CAGCTCAAAC AGGTGGTAGA GGAGCCATCG CCACAACTCC
901CAGCAGACAA GTTCTCTGCA GAGTTTGTTG ACTTTACCTC ACAGTGCTTA AAGAAGAATT
961CCAAAGAACG GCCTACATAC CCAGAGCTAA TGCAACATCC ATTTTTCACC CTACATGAAT
1021CCAAAGGAAC AGATGTGGCA TCTTTTGTAA AACTGATTCT TGGAGACTAC CCAACTTTCT
1081TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1141CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1201GTGGAAAGGA CGATATATCC ATGATGTCTA TAAATATACG CGTTAAGTCg acaatcaacc
1261tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)