Construct: ORF TRCN0000472461

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011771.1_s317c1
Derived from:
ccsbBroadEn_13087
DNA Barcode:
TCTCCCTTACTTGTGAGGATAAAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TDRD9 (122402)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472461
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 122402 TDRD9 tudor domain containing 9 XM_017020955.2 76.1% 67.9% (many diffs)
2 human 122402 TDRD9 tudor domain containing 9 XM_011536401.3 76% 75.7% (many diffs)
3 human 122402 TDRD9 tudor domain containing 9 XM_011536402.2 72.8% 71.5% (many diffs)
4 human 122402 TDRD9 tudor domain containing 9 XM_011536398.3 65.2% 64.9% (many diffs)
5 human 122402 TDRD9 tudor domain containing 9 XM_006720020.3 64.6% 64.4% (many diffs)
6 human 122402 TDRD9 tudor domain containing 9 XM_005267309.4 64.5% 59.4% (many diffs)
7 human 122402 TDRD9 tudor domain containing 9 XM_006720019.3 64.2% 64% (many diffs)
8 human 122402 TDRD9 tudor domain containing 9 NM_153046.3 63.4% 63.1% (many diffs)
9 human 122402 TDRD9 tudor domain containing 9 XM_011536397.2 60.9% 60.6% (many diffs)
10 human 122402 TDRD9 tudor domain containing 9 XM_011536400.2 57.1% 56.8% (many diffs)
11 mouse 74691 Tdrd9 tudor domain containing 9 XM_006516321.3 57.7% 60.8% (many diffs)
12 mouse 74691 Tdrd9 tudor domain containing 9 XM_006516319.2 55.7% 58.5% (many diffs)
13 mouse 74691 Tdrd9 tudor domain containing 9 XM_006516317.3 54.5% 57.3% (many diffs)
14 mouse 74691 Tdrd9 tudor domain containing 9 NM_029056.1 52.8% 55.4% (many diffs)
15 mouse 74691 Tdrd9 tudor domain containing 9 XM_006516316.2 51.6% 54.2% (many diffs)
16 mouse 74691 Tdrd9 tudor domain containing 9 XM_006516322.1 47.7% 50.4% (many diffs)
17 mouse 74691 Tdrd9 tudor domain containing 9 XM_006516320.2 47% 49.4% (many diffs)
18 mouse 74691 Tdrd9 tudor domain containing 9 XM_017315218.1 34.8% 35.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2700
ORF length:
2631
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtcggctacc atcagctgta aagagtttgc agactacttt gctgttcctg
121ttcaaaacaa gatgaatcct gcatatattt ttgaagtgga aggcaagccc cattcagttg
181aagagtatta tcttaatgat ttggagcaca ttcatcatag caagctctct cctcatctcc
241tggaggaacc ggtgataact aaggatatat atgaagttgc tgtctctctc attcagatgt
301ttgatgactt ggatatgaag gagagtggga acaaggcttg gtcgggggcc cagtttgtgt
361tggagcgaag cagtgtgttg gtgtttttgc caggtctggg tgaaataaat tatatgcatg
421aacttctcac aagcctggtt cataaaaggt tgcaggtcta tccactccat tcaagtgtgg
481ctttagaaga acagaataat gtctttttaa gtccagtccc tgggtacaga aagattattc
541tgtccaccaa tattgcagag agttctgtca cagttccaga tgtcaaatat gttatagatt
601tttgtttgac tagaactttg gtctgtgatg aagatacaaa ttatcagagt ctgcgattga
661gttgggcctc taaaaccagc tgtaatcaga gaaaaggccg tgctggacga gtgtctagag
721ggtactgtta ccggctggta cacaaggatt tctgggacaa ctccatccct gatcatgttg
781ttcctgagat gttgcgttgt ccattaggaa gcacgatctt gaaagtgaaa ttacttgaca
841tgggtgagcc gagagctctg ctggccactg ccctttcccc gcctggtctg agtgacattg
901agcgcaccat ccttctacta aaggaggttg gagcacttgc agtgagtggg cagagagaag
961atgaaaaccc ccatgatggt gaattgacct tcttaggaag agttttagcc caacttcctg
1021taaatcagca acttggtaaa ctcatagtcc ttggacatgt atttggatgt ctagatgaat
1081gtcttattat agcggcagct ctttctttga agaatttttt tgcaatgcct ttccggcagc
1141atctcgatgg atataggaac aaagtgaatt tctctggcag tagcaagagt gactgtattg
1201cacttgttga ggcatttaaa acatggaagg cttgcagaca gacaggggag ctgcggtacc
1261cgaaggatga acttaattgg ggacggttaa attacattca aatcaagaga attagagagg
1321tggctgaatt atatgaagaa ttgaagacta gaatctcaca gttcaacatg catgttgatt
1381ctcggcgacc tgtcatggac caagagtata tatataagca gcgattcatc ctacaggttg
1441tattggcagg tgctttctat ccaaattact ttacttttgg acagccggat gaggagatgg
1501cggtgaggga gctggctggc aaggacccca agacaactgt cgtgttgaaa cacattcctc
1561cctatggatt tctttactat aaacaactac agtctctctt tagacagtgt ggtcaagtca
1621aatccattgt atttgatggt gcaaaagcct ttgtggaatt ctcacgaaat ccaacagaga
1681gatttaaaac ccttcctgca gtatatatgg caattaagat gtctcaacta aaagtttcac
1741ttgaactcag cgttcattct gcagaggaaa ttgaagggaa ggtgcaaggc atgaacgtct
1801caaagctcag gaacacaagg gtgaatgtgg acttccagaa gcagacggta gatcctatgc
1861aagtctcctt taacacatca gacaggtccc agacagttac agatctcctt ctaactattg
1921atgtcacaga ggtggttgaa gtgggacact tttggggata caggattgat gaaaacaact
1981cagagattct gaaaaagctt actgctgaaa tcaaccaact gacgctggtg cccttgccca
2041ctcacccaca tccagacttg gtctgtctgg caccttttgc tgattttgat aaacaacgct
2101actttagagc tcaagtcctt tatgtttctg gaaattctgc tgaggtattc tttgtagatt
2161atggcaataa gtctcatgta gatctacatc ttttgatgga gattccctgt caatttcttg
2221aacttccttt ccaggctttg gaatttaaga tttgcaaaat gagaccatca gcaaagtctc
2281ttgtttgtgg caagcactgg agtgacggGG CCAGCCAGTG GTTCGCCTCT CTGGTGAGCG
2341GCTGCACCCT CCTTGTGAAG GTCTTCTCTG TGGTGCACAG CGTCCTGCAC GTGGATGTGT
2401ACCAGTACTC AGGGGTCCAG GATGCCATCA ACATAAGAGA CGTCCTCATC CAGCAGGGCT
2461ATGCCGAGCT CACGGAGGAG TCCTACGAGT CCAAGCAAAG CCATGAAGTT CTCAAGGGCC
2521TCTTTTCCAA GTCAGTAGAA AACATGACAG ATGGCTCTGT GCCCTTTCCC ATGAAAGACG
2581ACGAGAAATA TCTTATCCGG ATTTTGTTAG AGAGCTTTTC TACCAATAAA CTGGGTACTC
2641CAAACTGTAA GGCAGAACTT CACGGGCCTT TTAACCCTTA TGAACTAAGT GCCATAGTTT
2701TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
2761GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
2821TTTATATATC TTGTGGAAAG GACGATCTCC CTTACTTGTG AGGATAAAAA CGCGTTAAGT
2881Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)