Construct: ORF TRCN0000472493

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012830.1_s317c1
Derived from:
ccsbBroadEn_08323
DNA Barcode:
CGATGCATGTAAAACTTTATGGAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM49B (51571)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472493
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51571 FAM49B family with sequence simila... NM_001256763.2 99.8% 99.6% 507C>A
2 human 51571 FAM49B family with sequence simila... NM_001353242.2 99.8% 99.6% 507C>A
3 human 51571 FAM49B family with sequence simila... NM_001353243.2 99.8% 99.6% 507C>A
4 human 51571 FAM49B family with sequence simila... NM_001353244.2 99.8% 99.6% 507C>A
5 human 51571 FAM49B family with sequence simila... NM_001353245.1 99.8% 99.6% 507C>A
6 human 51571 FAM49B family with sequence simila... NM_001353246.1 99.8% 99.6% 507C>A
7 human 51571 FAM49B family with sequence simila... NM_001353247.1 99.8% 99.6% 507C>A
8 human 51571 FAM49B family with sequence simila... NM_001353248.2 99.8% 99.6% 507C>A
9 human 51571 FAM49B family with sequence simila... NM_001353249.1 99.8% 99.6% 507C>A
10 human 51571 FAM49B family with sequence simila... NM_001353250.1 99.8% 99.6% 507C>A
11 human 51571 FAM49B family with sequence simila... NM_001353251.1 99.8% 99.6% 507C>A
12 human 51571 FAM49B family with sequence simila... NM_001353252.1 99.8% 99.6% 507C>A
13 human 51571 FAM49B family with sequence simila... NM_001353253.1 99.8% 99.6% 507C>A
14 human 51571 FAM49B family with sequence simila... NM_001353254.2 99.8% 99.6% 507C>A
15 human 51571 FAM49B family with sequence simila... NM_001353255.1 99.8% 99.6% 507C>A
16 human 51571 FAM49B family with sequence simila... NM_001353256.2 99.8% 99.6% 507C>A
17 human 51571 FAM49B family with sequence simila... NM_001353257.2 99.8% 99.6% 507C>A
18 human 51571 FAM49B family with sequence simila... NM_001353258.2 99.8% 99.6% 507C>A
19 human 51571 FAM49B family with sequence simila... NM_001353259.2 99.8% 99.6% 507C>A
20 human 51571 FAM49B family with sequence simila... NM_001353260.2 99.8% 99.6% 507C>A
21 human 51571 FAM49B family with sequence simila... NM_001353261.2 99.8% 99.6% 507C>A
22 human 51571 FAM49B family with sequence simila... NM_001353262.2 99.8% 99.6% 507C>A
23 human 51571 FAM49B family with sequence simila... NM_001353263.2 99.8% 99.6% 507C>A
24 human 51571 FAM49B family with sequence simila... NM_001353264.2 99.8% 99.6% 507C>A
25 human 51571 FAM49B family with sequence simila... NM_001353265.2 99.8% 99.6% 507C>A
26 human 51571 FAM49B family with sequence simila... NM_001353266.2 99.8% 99.6% 507C>A
27 human 51571 FAM49B family with sequence simila... NM_001353267.2 99.8% 99.6% 507C>A
28 human 51571 FAM49B family with sequence simila... NM_001353268.2 99.8% 99.6% 507C>A
29 human 51571 FAM49B family with sequence simila... NM_016623.5 99.8% 99.6% 507C>A
30 human 51571 FAM49B family with sequence simila... XM_011517112.3 99.8% 99.6% 507C>A
31 human 51571 FAM49B family with sequence simila... XM_011517121.3 99.8% 99.6% 507C>A
32 human 51571 FAM49B family with sequence simila... XM_017013545.2 99.8% 99.6% 507C>A
33 human 51571 FAM49B family with sequence simila... XM_017013548.1 99.8% 99.6% 507C>A
34 human 51571 FAM49B family with sequence simila... XM_017013551.2 99.8% 99.6% 507C>A
35 human 51571 FAM49B family with sequence simila... XM_024447180.1 99.8% 99.6% 507C>A
36 human 51571 FAM49B family with sequence simila... NM_001353302.1 96.9% 96.6% (many diffs)
37 human 51571 FAM49B family with sequence simila... NM_001353303.1 96.9% 96.6% (many diffs)
38 human 51571 FAM49B family with sequence simila... NM_001353304.1 96.9% 96.6% (many diffs)
39 human 51571 FAM49B family with sequence simila... NM_001353305.1 96.9% 96.6% (many diffs)
40 human 51571 FAM49B family with sequence simila... NM_001353306.2 96.9% 96.6% (many diffs)
41 human 51571 FAM49B family with sequence simila... NM_001353307.2 96.9% 96.6% (many diffs)
42 human 51571 FAM49B family with sequence simila... NM_001353308.1 96.9% 96.6% (many diffs)
43 human 51571 FAM49B family with sequence simila... NM_001353309.1 96.9% 96.6% (many diffs)
44 human 51571 FAM49B family with sequence simila... NM_001353310.2 96.9% 96.6% (many diffs)
45 human 51571 FAM49B family with sequence simila... NM_001353311.2 96.9% 96.6% (many diffs)
46 human 51571 FAM49B family with sequence simila... NM_001353312.2 96.9% 96.6% (many diffs)
47 human 51571 FAM49B family with sequence simila... NM_001353313.2 96.9% 96.6% (many diffs)
48 human 51571 FAM49B family with sequence simila... NM_001353314.2 96.9% 96.6% (many diffs)
49 human 51571 FAM49B family with sequence simila... NM_001353315.2 96.9% 96.6% (many diffs)
50 human 51571 FAM49B family with sequence simila... XM_017013554.2 96.9% 96.6% (many diffs)
51 human 51571 FAM49B family with sequence simila... XM_017013557.2 96.9% 96.6% (many diffs)
52 human 51571 FAM49B family with sequence simila... NM_001353316.2 94.7% 89.5% (many diffs)
53 human 51571 FAM49B family with sequence simila... NM_001330612.2 54.8% 54.6% 0_1ins438;69C>A
54 human 51571 FAM49B family with sequence simila... NM_001353269.1 54.8% 54.6% 0_1ins438;69C>A
55 human 51571 FAM49B family with sequence simila... NM_001353270.1 54.8% 54.6% 0_1ins438;69C>A
56 human 51571 FAM49B family with sequence simila... NM_001353271.1 54.8% 54.6% 0_1ins438;69C>A
57 human 51571 FAM49B family with sequence simila... NM_001353272.1 54.8% 54.6% 0_1ins438;69C>A
58 human 51571 FAM49B family with sequence simila... NM_001353273.1 54.8% 54.6% 0_1ins438;69C>A
59 human 51571 FAM49B family with sequence simila... NM_001353274.1 54.8% 54.6% 0_1ins438;69C>A
60 human 51571 FAM49B family with sequence simila... NM_001353275.1 54.8% 54.6% 0_1ins438;69C>A
61 human 51571 FAM49B family with sequence simila... NM_001353276.2 54.8% 54.6% 0_1ins438;69C>A
62 human 51571 FAM49B family with sequence simila... NM_001353277.1 54.8% 54.6% 0_1ins438;69C>A
63 human 51571 FAM49B family with sequence simila... NM_001353278.1 54.8% 54.6% 0_1ins438;69C>A
64 human 51571 FAM49B family with sequence simila... NM_001353279.1 54.8% 54.6% 0_1ins438;69C>A
65 human 51571 FAM49B family with sequence simila... NM_001353280.1 54.8% 54.6% 0_1ins438;69C>A
66 human 51571 FAM49B family with sequence simila... NM_001353281.1 54.8% 54.6% 0_1ins438;69C>A
67 human 51571 FAM49B family with sequence simila... NM_001353282.2 54.8% 54.6% 0_1ins438;69C>A
68 human 51571 FAM49B family with sequence simila... NM_001353283.2 54.8% 54.6% 0_1ins438;69C>A
69 human 51571 FAM49B family with sequence simila... NM_001353284.2 54.8% 54.6% 0_1ins438;69C>A
70 human 51571 FAM49B family with sequence simila... NM_001353285.2 54.8% 54.6% 0_1ins438;69C>A
71 human 51571 FAM49B family with sequence simila... NM_001353286.2 54.8% 54.6% 0_1ins438;69C>A
72 human 51571 FAM49B family with sequence simila... NM_001353287.2 54.8% 54.6% 0_1ins438;69C>A
73 human 51571 FAM49B family with sequence simila... NM_001353288.2 54.8% 54.6% 0_1ins438;69C>A
74 human 51571 FAM49B family with sequence simila... NM_001353289.2 54.8% 54.6% 0_1ins438;69C>A
75 human 51571 FAM49B family with sequence simila... NM_001353290.2 54.8% 54.6% 0_1ins438;69C>A
76 human 51571 FAM49B family with sequence simila... NM_001353291.2 54.8% 54.6% 0_1ins438;69C>A
77 human 51571 FAM49B family with sequence simila... NM_001353292.2 54.8% 54.6% 0_1ins438;69C>A
78 human 51571 FAM49B family with sequence simila... NM_001353293.2 54.8% 54.6% 0_1ins438;69C>A
79 human 51571 FAM49B family with sequence simila... NM_001353294.2 54.8% 54.6% 0_1ins438;69C>A
80 human 51571 FAM49B family with sequence simila... NM_001353295.2 54.8% 54.6% 0_1ins438;69C>A
81 human 51571 FAM49B family with sequence simila... NM_001353296.2 54.8% 54.6% 0_1ins438;69C>A
82 human 51571 FAM49B family with sequence simila... NM_001353297.2 54.8% 54.6% 0_1ins438;69C>A
83 human 51571 FAM49B family with sequence simila... NM_001353298.2 54.8% 54.6% 0_1ins438;69C>A
84 human 51571 FAM49B family with sequence simila... NM_001353299.2 54.8% 54.6% 0_1ins438;69C>A
85 human 51571 FAM49B family with sequence simila... NM_001353300.2 54.8% 54.6% 0_1ins438;69C>A
86 human 51571 FAM49B family with sequence simila... NM_001353301.2 54.8% 54.6% 0_1ins438;69C>A
87 mouse 223601 Fam49b family with sequence simila... NM_144846.5 94.7% 99.3% (many diffs)
88 mouse 223601 Fam49b family with sequence simila... XM_006520761.2 94.7% 99.3% (many diffs)
89 mouse 223601 Fam49b family with sequence simila... XM_006520763.2 94.7% 99.3% (many diffs)
90 mouse 223601 Fam49b family with sequence simila... XM_006520764.3 94.7% 99.3% (many diffs)
91 mouse 223601 Fam49b family with sequence simila... XM_011245563.1 94.7% 99.3% (many diffs)
92 mouse 223601 Fam49b family with sequence simila... XM_011245565.2 94.7% 99.3% (many diffs)
93 mouse 223601 Fam49b family with sequence simila... XM_006520762.3 91.8% 96.2% (many diffs)
94 mouse 223601 Fam49b family with sequence simila... XM_006520765.2 91.8% 96.2% (many diffs)
95 mouse 223601 Fam49b family with sequence simila... XM_011245564.1 91.8% 96.2% (many diffs)
96 mouse 223601 Fam49b family with sequence simila... XM_017316550.1 91.8% 96.2% (many diffs)
97 mouse 223601 Fam49b family with sequence simila... XM_006520766.2 51.9% 54.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1038
ORF length:
972
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg gaatcttctt aaagttttga catgcacaga ccttgagcag gggccaaatt
121ttttccttga ttttgaaaat gcccagccta cagagtctga gaaggaaatt tataatcagg
181tgaatgtagt attaaaagat gcagaaggca tcttggagga cttgcagtca tacagaggag
241ctggccacga aatacgagag gcaatccagc atccagcaga tgagaagttg caagagaagg
301catggggtgc agttgttcca ctagtaggca aattaaagaa attttacgaa ttttctcaga
361ggttagaagc agcattaaga ggtcttctgg gagccttaac aagtacccca tattctccca
421cccagcatct agagcgagag caggctcttg ctaaacagtt tgcagaaatt cttcatttca
481cactccggtt tgatgaactc aagatgacaa atcctgccat acagaatgat ttcagctatt
541atagaagaac attgagtcgt atgaggatta aaaatgtacc gGCAGAAGGA GAAAATGAAG
601TAAATAATGA ATTGGCAAAT CGAATGTCTT TGTTTTATGC TGAGGCAACT CCAATGCTGA
661AAACCTTGAG TGATGCCACA ACAAAATTTG TATCAGAGAA TAAAAATTTA CCAATAGAAA
721ATACCACAGA TTGTTTAAGC ACAATGGCTA GTGTATGCAG AGTCATGCTG GAAACACCGG
781AATACAGAAG CAGATTTACA AATGAAGAGA CAGTGTCATT CTGCTTGAGG GTAATGGTGG
841GTGTCATAAT ACTCTATGAC CACGTACATC CAGTGGGAGC ATTTGCTAAA ACTTCCAAAA
901TTGATATGAA AGGTTGTATC AAAGTTCTTA AGGACCAACC TCCTAATAGT GTGGAAGGTC
961TTCTAAATGC TCTCAGGTAC ACAACAAAAC ATTTGAATGA TGAGACTACC TCCAAGCAAA
1021TTAAATCCAT GCTGCAATAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1081TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGCCCG TAACTTGAAA
1141GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGACGATGCA TGTAAAACTT
1201TATGGAAACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)