Construct: ORF TRCN0000472559
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016207.1_s317c1
- Derived from:
- ccsbBroadEn_11812
- DNA Barcode:
- TTATTCTGCGCAGCTCAGATTGTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LDLRAP1 (26119)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472559
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XM_024446315.1 | 99.7% | 99.6% | 469T>C;519A>G |
| 2 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XM_017000994.2 | 93.3% | 93.2% | 1_54del;523T>C;573A>G |
| 3 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | NM_015627.3 | 85.1% | 85% | 1_135del;604T>C;654A>G |
| 4 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XM_011541209.3 | 84.8% | 84.7% | (many diffs) |
| 5 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XM_006710559.4 | 72.4% | 70% | (many diffs) |
| 6 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XM_011541210.3 | 72.1% | 69.7% | (many diffs) |
| 7 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XM_006710560.4 | 71.5% | 69.8% | (many diffs) |
| 8 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XM_011541211.3 | 71.2% | 69.4% | (many diffs) |
| 9 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XM_006710561.4 | 70.7% | 70.1% | (many diffs) |
| 10 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XM_011541212.3 | 70.4% | 69.8% | (many diffs) |
| 11 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XR_946602.3 | 58.7% | (many diffs) | |
| 12 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XR_001737112.2 | 55.3% | (many diffs) | |
| 13 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XM_017000995.2 | 35.6% | 35% | (many diffs) |
| 14 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XR_001737113.2 | 26.2% | (many diffs) | |
| 15 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XR_426598.4 | 26.1% | (many diffs) | |
| 16 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XR_002956258.1 | 20.3% | (many diffs) | |
| 17 | human | 26119 | LDLRAP1 | low density lipoprotein rec... | XR_946603.3 | 17.2% | (many diffs) | |
| 18 | mouse | 100017 | Ldlrap1 | low density lipoprotein rec... | XM_006538423.3 | 84.9% | 87.8% | (many diffs) |
| 19 | mouse | 100017 | Ldlrap1 | low density lipoprotein rec... | NM_145554.2 | 72.8% | 75.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 855
- ORF length:
- 789
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgct gttcagcctc aagtacctgg gcatgacgct agtggagcag cccaagggtg 121 aggagctgtc ggccgccgcc atcaagagga tcgtggctac agctaaggcc agtgggaaga 181 agctgcagaa ggtgactctg aaggtgtcgc cacggggaat tatcctgaca gacaacctca 241 ccaaccagct cattgagaac gtgtccatat acaggatctc ctattgcaca gcagacaaga 301 tgcacgacaa ggtgtttgca tacatcgccc agagccagca caaccagagc ctcgagtgcc 361 acgccttcct ctgcaccaag cggaagatgg cacaggctgt taccctcacc GTAGCCCAGG 421 CCTTCAAAGT CGCCTTTGAG TTTTGGCAGG TGTCCAAGGA AGAGAAAGAG AAGAGGGACA 481 AAGCCAGCCA AGAGGGAGGG GACGTCCTGG GGGCCCGCCA AGACTGCACC CCCCCCTTGA 541 AGAGCTTGGT CGCCACTGGG AACCTGCTGG ACTTAGAGGA GACGGCTAAG GCCCCGCTGT 601 CCACGGTCAG CGCCAACACC ACCAACATGG ACGAGGTGCC GCGGCCACAA GCCTTGAGTG 661 GCAGCAGTGT TGTCTGGGAG CTGGATGATG GCCTGGATGA AGCGTTTTCG AGGCTTGCCC 721 AGTCTCGGAC AAACCCTCAG GTCCTGGACA CTGGCCTGAC AGCCCAGGAC ATGCATTACG 781 CCCAGTGCCT CTCGCCTGTC GACTGGGACA AGCCTGACAG CAGCGGCACA GAGCAGGATG 841 ACCTCTTCAG CTTCTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 901 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 961 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TTATTCTGCG CAGCTCAGAT 1021 TGTCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt