Construct: ORF TRCN0000472581

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012700.1_s317c1
Derived from:
ccsbBroadEn_11262
DNA Barcode:
CCAGACCTTACAAATCCACTCGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PUDP (8226)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472581
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8226 PUDP pseudouridine 5'-phosphatase NM_012080.5 93.5% 93.4% 1_42del;346G>A;456G>A
2 human 8226 PUDP pseudouridine 5'-phosphatase NM_001135565.2 84.9% 84.8% (many diffs)
3 human 8226 PUDP pseudouridine 5'-phosphatase NM_001178136.2 74.7% 74.5% (many diffs)
4 human 8226 PUDP pseudouridine 5'-phosphatase NM_001178135.2 74.2% 66.8% (many diffs)
5 human 8226 PUDP pseudouridine 5'-phosphatase XR_001755734.1 36.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
708
ORF length:
642
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga cggacttctt ctggatactg aacggctgta ttcagtggtg tttcaagaaa
121tatgtaatcg ctatgacaag aaatacagct gggatgtaaa gtccctggtt atgggtaaga
181aggcattaga ggcggcacag attataatag acgtcttgca gctcccgatg tccaaagagg
241agctggtgga agaaagccaa acgaagttaa aggaagtgtt ccccacggct gcgctcatgc
301caggggcgga gaaactcatc atccaccTGC GGAAACATGG CATCCCCTTT GCACTGGCCA
361CCAGCTCGAG GTCCGCGTCG TTCGATATGA AGACAAGCCG CCACAAGGAG TTCTTCAGCT
421TGTTTTCCCA CATTGTGCTG GGAGATGACC CCGAAGTGCA GCATGGCAAG CCAGACCCAG
481ACATCTTCCT AGCTTGTGCC AAGAGGTTCT CTCCCCCTCC TGCTATGGAG AAGTGCCTTG
541TCTTTGAAGA TGCTCCCAAT GGGGTGGAGG CGGCCCTGGC AGCTGGGATG CAGGTGGTCA
601TGGTTCCTGA CGGAAACTTG AGCCGAGATC TGACAACAAA GGCCACCCTG GTGCTGAATT
661CCCTGCAGGA CTTCCAGCCC GAGCTGTTTG GTTTGCCCTC CTATGAGTGC CCAACTGTCT
721TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
781CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
841GTGGAAAGGA CGACCAGACC TTACAAATCC ACTCGACACG CGTTAAGTCg acaatcaacc
901tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)