Construct: ORF TRCN0000472605
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005436.1_s317c1
- Derived from:
- ccsbBroadEn_11285
- DNA Barcode:
- AGTAATGACTTTTAGGTGGCCGAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CADPS (8618)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472605
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534199.2 | 17.1% | 17.1% | 1_3222del |
| 2 | human | 8618 | CADPS | calcium dependent secretion... | NM_183393.3 | 16.9% | 16.9% | 1_3171del;3239_3240insGTTTGCTAAAATGTG |
| 3 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534200.3 | 16.7% | 16.7% | 1_3222del;3290_3291insGTTTGCTAAAATGTG |
| 4 | human | 8618 | CADPS | calcium dependent secretion... | XM_006713378.3 | 16.6% | 16.6% | 1_3234del;3302_3303insGTTTGCTAAAATGTG |
| 5 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534198.3 | 16.6% | 16.6% | 1_3240del;3308_3309insGTTTGCTAAAATGTG |
| 6 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007386.2 | 16.6% | 16.6% | 1_3252del;3320_3321insGTTTGCTAAAATGTG |
| 7 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007385.2 | 16.5% | 16.5% | 1_3261del;3329_3330insGTTTGCTAAAATGTG |
| 8 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007384.2 | 16.5% | 16.5% | 1_3273del;3341_3342insGTTTGCTAAAATGTG |
| 9 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007378.1 | 16.5% | 16.5% | 1_3369del |
| 10 | human | 8618 | CADPS | calcium dependent secretion... | NM_183394.3 | 16.4% | 16.4% | 1_3291del;3359_3360insGTTTGCTAAAATGTG |
| 11 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534196.2 | 16.4% | 16.4% | 1_3390del |
| 12 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534195.2 | 16.4% | 16.4% | 1_3393del |
| 13 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007383.2 | 16.4% | 16.4% | 1_3303del;3371_3372insGTTTGCTAAAATGTG |
| 14 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007372.1 | 16.3% | 16.3% | 1_3396del |
| 15 | human | 8618 | CADPS | calcium dependent secretion... | XM_024453802.1 | 16.3% | 16.3% | 1_3399del |
| 16 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534193.2 | 16.3% | 16.3% | 1_3408del |
| 17 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007380.2 | 16.3% | 16.3% | 1_3324del;3392_3393insGTTTGCTAAAATGTG |
| 18 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534192.2 | 16.2% | 16.2% | 1_3420del |
| 19 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007369.2 | 16.2% | 16.2% | 1_3420del |
| 20 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007368.1 | 16.2% | 16.2% | 1_3438del |
| 21 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534189.2 | 16.1% | 16.1% | 1_3462del |
| 22 | human | 8618 | CADPS | calcium dependent secretion... | XM_024453801.1 | 16.1% | 16.1% | 1_3468del |
| 23 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534197.2 | 16% | 16% | 1_3381del;3449_3450insGTTTGCTAAAATGTG |
| 24 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007379.2 | 16% | 16% | 1_3381del;3449_3450insGTTTGCTAAAATGTG |
| 25 | human | 8618 | CADPS | calcium dependent secretion... | XM_024453799.1 | 16% | 16% | 1_3480del |
| 26 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007377.2 | 16% | 16% | 1_3387del;3455_3456insGTTTGCTAAAATGTG |
| 27 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534203.2 | 16% | 16% | 1_3390del;3458_3459insGTTTGCTAAAATGTG |
| 28 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007376.2 | 16% | 16% | 1_3393del;3461_3462insGTTTGCTAAAATGTG |
| 29 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007375.1 | 16% | 16% | 1_3396del;3464_3465insGTTTGCTAAAATGTG |
| 30 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007374.2 | 16% | 16% | 1_3399del;3467_3468insGTTTGCTAAAATGTG |
| 31 | human | 8618 | CADPS | calcium dependent secretion... | NM_003716.4 | 15.9% | 15.9% | 1_3408del;3476_3477insGTTTGCTAAAATGTG |
| 32 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007373.2 | 15.9% | 15.9% | 1_3408del;3476_3477insGTTTGCTAAAATGTG |
| 33 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007371.2 | 15.9% | 15.9% | 1_3411del;3479_3480insGTTTGCTAAAATGTG |
| 34 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534194.2 | 15.9% | 15.9% | 1_3420del;3488_3489insGTTTGCTAAAATGTG |
| 35 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007370.2 | 15.9% | 15.9% | 1_3420del;3488_3489insGTTTGCTAAAATGTG |
| 36 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534191.3 | 15.8% | 15.8% | 1_3438del;3506_3507insGTTTGCTAAAATGTG |
| 37 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534183.2 | 15.8% | 15.8% | 1_3540del |
| 38 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007366.2 | 15.7% | 15.7% | 1_3462del;3530_3531insGTTTGCTAAAATGTG |
| 39 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534182.2 | 15.7% | 15.7% | 1_3558del |
| 40 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007364.2 | 15.7% | 15.7% | 1_3480del;3548_3549insGTTTGCTAAAATGTG |
| 41 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534180.2 | 15.6% | 15.6% | 1_3579del |
| 42 | human | 8618 | CADPS | calcium dependent secretion... | XM_024453800.1 | 15.6% | 15.6% | 1_3489del;3557_3558insGTTTGCTAAAATGTG |
| 43 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534178.2 | 15.5% | 15.5% | 1_3609del |
| 44 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534177.2 | 15.5% | 15.5% | 1_3627del |
| 45 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007363.2 | 15.4% | 15.4% | 1_3558del;3626_3627insGTTTGCTAAAATGTG |
| 46 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007362.2 | 15.3% | 15.3% | 1_3567del;3635_3636insGTTTGCTAAAATGTG |
| 47 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007361.2 | 15.3% | 15.3% | 1_3579del;3647_3648insGTTTGCTAAAATGTG |
| 48 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007360.2 | 15.1% | 15.1% | 1_3627del;3695_3696insGTTTGCTAAAATGTG |
| 49 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007359.2 | 15.1% | 15.1% | 1_3636del;3704_3705insGTTTGCTAAAATGTG |
| 50 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007358.2 | 15% | 15% | 1_3648del;3716_3717insGTTTGCTAAAATGTG |
| 51 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518044.3 | 15.4% | 16.6% | (many diffs) |
| 52 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518043.3 | 15.4% | 16.6% | (many diffs) |
| 53 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316038.1 | 15.3% | 16.6% | (many diffs) |
| 54 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518041.3 | 15.1% | 16.4% | (many diffs) |
| 55 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316037.1 | 15.1% | 16.3% | (many diffs) |
| 56 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316036.1 | 15.1% | 16.3% | (many diffs) |
| 57 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316035.1 | 15% | 16.2% | (many diffs) |
| 58 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518040.3 | 15% | 16.2% | (many diffs) |
| 59 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316034.1 | 15% | 16.2% | (many diffs) |
| 60 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518039.3 | 14.9% | 16.1% | (many diffs) |
| 61 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518048.3 | 14.8% | 16% | (many diffs) |
| 62 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518036.3 | 14.8% | 16% | (many diffs) |
| 63 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316033.1 | 14.8% | 16% | (many diffs) |
| 64 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316032.1 | 14.7% | 15.9% | (many diffs) |
| 65 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518034.3 | 14.7% | 15.9% | (many diffs) |
| 66 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518035.3 | 14.7% | 15.9% | (many diffs) |
| 67 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518033.3 | 14.7% | 15.9% | (many diffs) |
| 68 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316031.1 | 14.7% | 15.8% | (many diffs) |
| 69 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | NM_001042617.1 | 14.7% | 15.8% | (many diffs) |
| 70 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518032.3 | 14.6% | 15.8% | (many diffs) |
| 71 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | NM_012061.3 | 14.6% | 15.8% | (many diffs) |
| 72 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518031.3 | 14.5% | 15.7% | (many diffs) |
| 73 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316030.1 | 14.5% | 15.7% | (many diffs) |
| 74 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518029.3 | 14.5% | 15.6% | (many diffs) |
| 75 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316029.1 | 14.5% | 15.6% | (many diffs) |
| 76 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518028.3 | 14.5% | 15.6% | (many diffs) |
| 77 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518027.3 | 14.4% | 15.6% | (many diffs) |
| 78 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518026.3 | 14.4% | 15.6% | (many diffs) |
| 79 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518025.3 | 14.4% | 15.6% | (many diffs) |
| 80 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518024.3 | 14.4% | 15.5% | (many diffs) |
| 81 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518030.3 | 13.7% | 14.7% | (many diffs) |
| 82 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XR_001781126.1 | 10.1% | (many diffs) | |
| 83 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518042.3 | 9.8% | 8.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 732
- ORF length:
- 666
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 gtggcatgtt taatgttatg gttgatgcca aagctcaatc aacaaaactt tgcagcatgg 121 aaatgggcca agagtttgct aaaatgtggc atcaatacca ttcaaaaata gacgaactaa 181 ttgaagaaac tgttaaagaa atgataacac tcttGGTTGC AAAGTTCGTT ACTATCTTGG 241 AAGGAGTGCT GGCAAAATTA TCCAGATATG ACGAAGGGAC TTTGTTTTCT TCTTTTCTGT 301 CATTTACCGT GAAGGCAGCT TCCAAATATG TGGATGTACC TAAACCCGGG ATGGACGTGG 361 CCGACGCCTA CGTGACTTTC GTCCGCCATT CTCAGGATGT CCTGCGTGAT AAGGTCAATG 421 AGGAGATGTA CATAGAAAGG TTATTTGATC AATGGTACAA CAGCTCCATG AACGTGATCT 481 GCACCTGGTT GACGGACCGG ATGGACTTAC AGCTTCATAT TTATCAGTTG AAAACACTAA 541 TTAGGATGGT AAAGAAAACC TACAGAGATT TCCGATTGCA AGGGGTCCTG GACTCCACCT 601 TAAACAGCAA GACCTATGAA ACGATCCGGA ACCGTCTCAC TGTGGAGGAA GCCACAGCAT 661 CAGTGAGTGA AGGTGGGGGA CTGCAGGGCA TCAGCATGAA GGACAGCGAT GAGGAAGACG 721 AAGAAGACGA TTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 781 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 841 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAAGT AATGACTTTT AGGTGGCCGA 901 AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t