Construct: ORF TRCN0000473005
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014416.1_s317c1
- Derived from:
- ccsbBroadEn_03769
- DNA Barcode:
- TCCCAGCTACCACTCCTAGCGACC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTNNBIP1 (56998)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473005
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56998 | CTNNBIP1 | catenin beta interacting pr... | NM_001012329.2 | 100% | 100% | |
| 2 | human | 56998 | CTNNBIP1 | catenin beta interacting pr... | NM_020248.3 | 100% | 100% | |
| 3 | human | 56998 | CTNNBIP1 | catenin beta interacting pr... | XM_017001853.2 | 100% | 100% | |
| 4 | human | 56998 | CTNNBIP1 | catenin beta interacting pr... | XM_017001854.2 | 100% | 100% | |
| 5 | human | 56998 | CTNNBIP1 | catenin beta interacting pr... | XM_017001855.2 | 100% | 100% | |
| 6 | mouse | 67087 | Ctnnbip1 | catenin beta interacting pr... | NM_001141930.1 | 93.8% | 97.5% | (many diffs) |
| 7 | mouse | 67087 | Ctnnbip1 | catenin beta interacting pr... | NM_023465.4 | 93.8% | 97.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 226
- ORF end:
- 469
- ORF length:
- 243
- Sequence:
-
1 GGGGGGAGGG GTTTTATGCG ATGGAGTTTC CCCACACTGA GTGGGTGGAG ACTGAAGTTA 61 GGCCAGCTTG GCACTTGATG TAATTCTCCT TGGAATTTGC CCTTTTTGAG TTTGGATCTT 121 GGTTCATTCT CAAGCCTCAG ACAGTGGTTC AAAGTTTTTT TCTTCCATTT CAGGTGTCGT 181 GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG TTGGCATGAA CCGCGAGGGA 241 GCTCCCGGGA AGAGTCCGGA GGAGATGTAC ATTCAGCAGA AGGTCCGAGT GCTGCTCATG 301 CTGCGGAAGA TGGGATCAAA CCTGACAGCC AGCGAGGAGG AGTTCCTGCG CACCTATGCA 361 GGGGTGGTCA ACAGCCAGCT CAGCCAGCTG CCTCCGCACT CCATCGACCA GGGTGCAGAG 421 GACGTGGTGA TGGCGTTTTC CAGGTCGGAG ACGGAAGACC GGAGGCAGTA CCCAACTTTC 481 TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT 541 ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT 601 TGTGGAAAGG ACGATCCCAG CTACCACTCC TAGCGACCAC GCGTTAAGTC gacaatcaac 661 ctctggatta caaaatttgt gaaagatt