Construct: ORF TRCN0000473082
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004135.1_s317c1
- Derived from:
- ccsbBroadEn_06564
- DNA Barcode:
- TAAATTTTGTCTGCTATTGACACA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MAX (4149)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473082
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4149 | MAX | MYC associated factor X | XM_011536773.3 | 76.6% | 58.6% | (many diffs) |
| 2 | human | 4149 | MAX | MYC associated factor X | NM_002382.5 | 76.5% | 55.4% | (many diffs) |
| 3 | human | 4149 | MAX | MYC associated factor X | NM_145113.3 | 75.8% | 74.6% | (many diffs) |
| 4 | human | 4149 | MAX | MYC associated factor X | NM_145112.3 | 71.2% | 51% | (many diffs) |
| 5 | human | 4149 | MAX | MYC associated factor X | NM_197957.3 | 55.5% | 42.3% | (many diffs) |
| 6 | human | 4149 | MAX | MYC associated factor X | NM_145114.2 | 52.5% | 44.2% | (many diffs) |
| 7 | human | 4149 | MAX | MYC associated factor X | NM_001271069.1 | 49.1% | 36.4% | (many diffs) |
| 8 | human | 4149 | MAX | MYC associated factor X | XR_001750327.2 | 16.4% | (many diffs) | |
| 9 | human | 4149 | MAX | MYC associated factor X | XR_943450.3 | 15.6% | (many diffs) | |
| 10 | human | 4149 | MAX | MYC associated factor X | XR_943451.3 | 15.4% | (many diffs) | |
| 11 | human | 4149 | MAX | MYC associated factor X | XR_002957553.1 | 15.3% | 1_193del;240C>A;596_2611del | |
| 12 | human | 4149 | MAX | MYC associated factor X | XR_943452.3 | 14.5% | (many diffs) | |
| 13 | human | 4149 | MAX | MYC associated factor X | XR_001750326.2 | 14.4% | (many diffs) | |
| 14 | mouse | 17187 | Max | Max protein | NM_008558.2 | 73.8% | 58.8% | (many diffs) |
| 15 | mouse | 17187 | Max | Max protein | XM_006515524.3 | 73.6% | 74.6% | (many diffs) |
| 16 | mouse | 17187 | Max | Max protein | NM_001146176.1 | 68.5% | 54.2% | (many diffs) |
| 17 | mouse | 17187 | Max | Max protein | XM_006515523.3 | 52.2% | 38.2% | (many diffs) |
| 18 | mouse | 17187 | Max | Max protein | XR_381483.3 | 16.7% | (many diffs) | |
| 19 | mouse | 17187 | Max | Max protein | XR_872708.2 | 16.5% | (many diffs) | |
| 20 | mouse | 17187 | Max | Max protein | XR_001780418.1 | 15.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 492
- ORF length:
- 402
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGAGCGATAA CGATGACATC GAGGTGGAGA 121 GCGACGAAGA GCAACAGAGG TTTCAATCTG CGGCTGACAA ACGGGCTCAT CATAATGCAC 181 TGGAACGAAA ACGTAGGGAC CACATCAAAG ACAGCTTTCA CAGTTTGCGG GACTCAGTCC 241 CATCACTCCA AGGAGAGAAG GCATCCCGGG CCCAAATCCT AGACAAAGCC ACAGAATATA 301 TCCAGTATAT GCGAAGGAAA AACCACACAC ACCAGCAAGA TATTGACGAC CTCAAGCGGC 361 AGAATGCTCT TCTGGAGCAG CAAGGTGAGC ACCCGAGCTC GTGGGGCAGC TGGCCCTGCT 421 GTGCTCCAGC CAGGTCAGGC TTTGGCACCT GGGCCTGCAG AGTCAGAGCC AGTCATGGAG 481 TATGTGCTCA GTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 541 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 601 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATAA ATTTTGTCTG CTATTGACAC 661 AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t