Transcript: Mouse NM_008558.2

Mus musculus Max protein (Max), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Max (17187)
Length:
2005
CDS:
224..706

Additional Resources:

NCBI RefSeq record:
NM_008558.2
NBCI Gene record:
Max (17187)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008558.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000304477 ACGTAGGGACCACATCAAAGA pLKO_005 325 CDS 100% 4.950 6.930 N Max n/a
2 TRCN0000042716 GTTTCAATCTGCGGCTGACAA pLKO.1 274 CDS 100% 4.950 6.930 N Max n/a
3 TRCN0000042713 GCTCACCATAATGCACTGGAA pLKO.1 299 CDS 100% 2.640 3.696 N Max n/a
4 TRCN0000042714 GCAACAGAGTATATCCAGTAT pLKO.1 422 CDS 100% 4.950 3.960 N Max n/a
5 TRCN0000315984 GCAACAGAGTATATCCAGTAT pLKO_005 422 CDS 100% 4.950 3.960 N Max n/a
6 TRCN0000304478 CCCTCCTTTGTAAGGATTATT pLKO_005 1177 3UTR 100% 15.000 10.500 N Max n/a
7 TRCN0000374152 ACCATTGAGAAGACTCTTTAT pLKO_005 786 3UTR 100% 13.200 9.240 N Max n/a
8 TRCN0000257324 ACGAAGAGCAACCGAGGTTTC pLKO_005 258 CDS 100% 6.000 4.200 N MAX n/a
9 TRCN0000042717 CACTGGAGAAGGCAAGATCAA pLKO.1 525 CDS 100% 4.950 3.465 N Max n/a
10 TRCN0000374209 TGCCCAACTGCAGACCAACTA pLKO_005 547 CDS 100% 4.950 3.465 N Max n/a
11 TRCN0000042715 CCCAAATCCTAGACAAAGCAA pLKO.1 405 CDS 100% 3.000 2.100 N Max n/a
12 TRCN0000316020 CCCAAATCCTAGACAAAGCAA pLKO_005 405 CDS 100% 3.000 2.100 N Max n/a
13 TRCN0000039867 GACCACATCAAAGACAGCTTT pLKO.1 332 CDS 100% 4.950 2.970 N MAX n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008558.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00978 pDONR223 100% 96% 99.3% None (many diffs) n/a
2 ccsbBroad304_00978 pLX_304 0% 96% 99.3% V5 (many diffs) n/a
3 TRCN0000467427 CCTTCTTCGGGGACGGAAGTTACA pLX_317 69.4% 96% 99.3% V5 (many diffs) n/a
4 ccsbBroadEn_15495 pDONR223 0% 90.4% 93.7% None (many diffs) n/a
5 ccsbBroad304_15495 pLX_304 0% 90.4% 93.7% V5 (many diffs) n/a
6 TRCN0000468720 GTCTTCCACGTTCCTTTAATGCAG pLX_317 73.3% 90.4% 93.7% V5 (many diffs) n/a
7 ccsbBroadEn_15494 pDONR223 0% 90.2% 93.1% None (many diffs) n/a
8 ccsbBroad304_15494 pLX_304 0% 90.2% 93.1% V5 (many diffs) n/a
9 TRCN0000469052 TCAGTACTAGGAAGGTCTCTACGA pLX_317 74.2% 90.2% 93.1% V5 (many diffs) n/a
10 ccsbBroadEn_06564 pDONR223 100% 73.8% 58.8% None (many diffs) n/a
11 ccsbBroad304_06564 pLX_304 0% 73.8% 58.8% V5 (many diffs) n/a
12 TRCN0000473082 TAAATTTTGTCTGCTATTGACACA pLX_317 100% 73.8% 58.8% V5 (many diffs) n/a
13 ccsbBroadEn_00977 pDONR223 100% 48.2% 37.9% None (many diffs) n/a
14 ccsbBroad304_00977 pLX_304 0% 48.2% 37.9% V5 (many diffs) n/a
15 TRCN0000471511 CTCATGCCCAAAAATTGGGTAACG pLX_317 100% 48.2% 37.9% V5 (many diffs) n/a
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