Construct: ORF TRCN0000473471

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011870.1_s317c1
Derived from:
ccsbBroadEn_01441
DNA Barcode:
GGCAACGGAACGTTATTAGGTACT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPLP0 (6175)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473471
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6175 RPLP0 ribosomal protein lateral s... NM_001002.4 100% 100%
2 human 6175 RPLP0 ribosomal protein lateral s... NM_053275.3 100% 100%
3 human 113157 RPLP0P2 ribosomal protein lateral s... NR_002775.2 25.4% (many diffs)
4 mouse 11837 Rplp0 ribosomal protein, large, P0 NM_007475.5 90.4% 97.4% (many diffs)
5 mouse 544707 Gm5779 predicted gene 5779; riboso... NR_033602.1 83.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1017
ORF length:
951
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc cagggaagac agggcgacct ggaagtccaa ctacttcctt aagatcatcc
121aactattgga tgattatccg aaatgtttca ttgtgggagc agacaatgtg ggctccaagc
181agatgcagca gatccgcatg tcccttcgcg ggaaggctgt ggtgctgatg ggcaagaaca
241ccatgatgcg caaggccatc cgagggcacc tggaaaacaa cccagctctg gagaaactgc
301tgcctcatat ccgggggaat gtgggctttg tgttcaccaa ggaggacctc actgagatca
361gggacatgtt gctggccaat aaggtgccag ctgctgcccg tgctggtgcc attgccccat
421gtgaagtcac tgtgccagcc cagaacactg gtctcgggcc cgagaagacc tcctttttcc
481aggctttagg tatcaccact aaaatctcca ggggcaccat tgaaatcctg agtgatgtgc
541agctgatcaa gactggagac aaagtgggag ccagcgaagc cacgctgctg aacatgctca
601acatctcccc cttctccttt gggctggTCA TCCAGCAGGT GTTCGACAAT GGCAGCATCT
661ACAACCCTGA AGTGCTTGAT ATCACAGAGG AAACTCTGCA TTCTCGCTTC CTGGAGGGTG
721TCCGCAATGT TGCCAGTGTC TGTCTGCAGA TTGGCTACCC AACTGTTGCA TCAGTACCCC
781ATTCTATCAT CAACGGGTAC AAACGAGTCC TGGCCTTGTC TGTGGAGACG GATTACACCT
841TCCCACTTGC TGAAAAGGTC AAGGCCTTCT TGGCTGATCC ATCTGCCTTT GTGGCTGCTG
901CCCCTGTGGC TGCTGCCACC ACAGCTGCTC CTGCTGCTGC TGCAGCCCCA GCTAAGGTTG
961AAGCCAAGGA AGAGTCGGAG GAGTCGGACG AGGATATGGG ATTTGGTCTC TTTGACTACC
1021CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1081TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1141ATATATCTTG TGGAAAGGAC GAGGCAACGG AACGTTATTA GGTACTACGC GTTAAGTCga
1201caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)