Construct: ORF TRCN0000473496

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018553.1_s317c1
Derived from:
ccsbBroadEn_01662
DNA Barcode:
ATCACGGCATTTAAGGAGTGGGGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TFDP2 (7029)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473496
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7029 TFDP2 transcription factor Dp-2 NM_001178138.2 100% 100%
2 human 7029 TFDP2 transcription factor Dp-2 NM_006286.5 100% 100%
3 human 7029 TFDP2 transcription factor Dp-2 XM_017007098.2 100% 100%
4 human 7029 TFDP2 transcription factor Dp-2 XM_017007097.2 99.7% 99.7% 335_336insGCA
5 human 7029 TFDP2 transcription factor Dp-2 XM_024453729.1 99.7% 99.7% 335_336insGCA
6 human 7029 TFDP2 transcription factor Dp-2 NM_001178140.1 91.7% 91.6% 1_99del;101_102delCAinsTG;434_435insGCA
7 human 7029 TFDP2 transcription factor Dp-2 XM_011513101.3 90.6% 90.5% 1_117del;119_120delCAinsTG
8 human 7029 TFDP2 transcription factor Dp-2 XM_011513102.2 90.6% 90.5% 1_117del;119_120delCAinsTG
9 human 7029 TFDP2 transcription factor Dp-2 XM_024453726.1 90.6% 90.5% 1_117del;119_120delCAinsTG
10 human 7029 TFDP2 transcription factor Dp-2 XM_024453727.1 90.6% 90.5% 1_117del;119_120delCAinsTG
11 human 7029 TFDP2 transcription factor Dp-2 XM_011513106.3 90.4% 90.3% 1_117del;119_120delCAinsTG;452_453insGCA
12 human 7029 TFDP2 transcription factor Dp-2 XM_024453728.1 90.4% 90.3% 1_117del;119_120delCAinsTG;452_453insGCA
13 human 7029 TFDP2 transcription factor Dp-2 XM_024453725.1 89.5% 89.5% 1_132del;467_468insGCA
14 human 7029 TFDP2 transcription factor Dp-2 NM_001178141.2 89.5% 87.5% (many diffs)
15 human 7029 TFDP2 transcription factor Dp-2 XM_005247731.3 86.3% 86.3% 1_183del
16 human 7029 TFDP2 transcription factor Dp-2 XM_011513108.3 86.1% 85.2% (many diffs)
17 human 7029 TFDP2 transcription factor Dp-2 XM_011513109.2 86.1% 85.2% (many diffs)
18 human 7029 TFDP2 transcription factor Dp-2 XM_024453730.1 86.1% 85.2% (many diffs)
19 human 7029 TFDP2 transcription factor Dp-2 NM_001178139.2 86.1% 86.1% 1_183del;518_519insGCA
20 human 7029 TFDP2 transcription factor Dp-2 XM_017007091.1 86.1% 86.1% 1_183del;518_519insGCA
21 human 7029 TFDP2 transcription factor Dp-2 XM_011513111.2 85.9% 84.9% (many diffs)
22 human 7029 TFDP2 transcription factor Dp-2 XM_017007102.2 85.9% 84.9% (many diffs)
23 human 7029 TFDP2 transcription factor Dp-2 NM_001178142.2 80.3% 80.3% 0_1ins225;110_111insGCA
24 human 7029 TFDP2 transcription factor Dp-2 XM_011513107.2 65.8% 65.5% (many diffs)
25 human 7029 TFDP2 transcription factor Dp-2 XM_017007100.2 65.5% 65.3% (many diffs)
26 human 7029 TFDP2 transcription factor Dp-2 XM_017007104.2 62.4% 61.1% (many diffs)
27 mouse 211586 Tfdp2 transcription factor Dp 2 NM_001184711.1 91.9% 95.5% (many diffs)
28 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510970.3 91.9% 95.5% (many diffs)
29 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510971.3 91.9% 95.5% (many diffs)
30 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510972.3 91.9% 95.5% (many diffs)
31 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510973.3 91.9% 95.5% (many diffs)
32 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510974.2 91.9% 95.5% (many diffs)
33 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510975.3 91.9% 95.5% (many diffs)
34 mouse 211586 Tfdp2 transcription factor Dp 2 NM_001184706.1 91.7% 95.3% (many diffs)
35 mouse 211586 Tfdp2 transcription factor Dp 2 NM_001184709.1 91.7% 95.3% (many diffs)
36 mouse 211586 Tfdp2 transcription factor Dp 2 NM_178667.4 91.7% 95.3% (many diffs)
37 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510976.3 91.7% 95.3% (many diffs)
38 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510977.3 91.7% 95.3% (many diffs)
39 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510978.3 88% 91.9% (many diffs)
40 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510979.3 88% 91.9% (many diffs)
41 mouse 211586 Tfdp2 transcription factor Dp 2 XM_017313267.1 87.8% 91.7% (many diffs)
42 mouse 211586 Tfdp2 transcription factor Dp 2 NM_001184710.1 85.5% 89.6% (many diffs)
43 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510964.2 82.5% 85.8% (many diffs)
44 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510966.2 82.3% 85.5% (many diffs)
45 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510980.3 79.6% 82.6% (many diffs)
46 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510981.3 79.6% 82.6% (many diffs)
47 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510961.3 79.4% 82.5% (many diffs)
48 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510962.3 79.1% 82.3% (many diffs)
49 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510967.2 79% 82.5% (many diffs)
50 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510968.2 78.8% 82.3% (many diffs)
51 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510963.3 76% 79.4% (many diffs)
52 mouse 211586 Tfdp2 transcription factor Dp 2 XM_006510965.3 75.8% 79.1% (many diffs)
53 mouse 211586 Tfdp2 transcription factor Dp 2 NM_001184708.1 73.8% 77.7% (many diffs)
54 mouse 211586 Tfdp2 transcription factor Dp 2 XM_017313266.1 68.9% 71.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1224
ORF length:
1158
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat tataagcaca ccacagagac taaccagttc aggaagtgtt ctgattggga
121gtccatatac ccctgcacca gcaatggtta ctcagacaca catagcagaa gctactggct
181gggtccctgg tgatagaaaa cgggctagaa aatttataga ctctgatttt tcagaaagta
241aacgaagcaa aaaaggagat aaaaatggga aaggcttgag acacttttca atgaaagtgt
301gtgagaaagt tcaacgaaaa ggtacaacat cgtacaatga agtcgctgat gagctggtgt
361cagagttcac caattcaaat aaccatttgg ctgctgattc gcaggcttat gatcagaaga
421acattaggcg aagagtttat gatgctttaa atgtgctaat ggcaatgaac ataatttcaa
481aggaaaaaaa agaaatcaag tggattggcc tgcctaccaa ttctgctcag gaatgtcaga
541atctggagat agagaagcag aggcggatag aacggataaa gcagaagcgg gcccagctgc
601aagaacttct cctacagcaa atcgctttca aaaacctggt acagagaaat cgacaaaatg
661agcagcaaaa ccagggcccg ccggctctga actctaccaT TCAGCTGCCA TTCATAATCA
721TCAATACAAG CAGAAAAACA GTCATAGATT GCAGCATCTC CAGTGACAAG TTTGAGTATC
781TTTTCAATTT TGACAACACC TTTGAGATCC ATGATGACAT AGAAGTACTA AAGCGGATGG
841GAATGTCGTT TGGCCTGGAG TCAGGCAAAT GCTCTCTGGA GGATCTGAAA CTTGCGAAAT
901CCCTGGTGCC AAAGGCTTTA GAAGGTTATA TCACAGATAT CTCCACAGGA CCTTCTTGGT
961TAAATCAGGG ACTACTTCTG AACTCTACCC AATCAGTTTC AAATTTAGAC CTGACCACTG
1021GTGCCACCTT ACCCCAGTCA AGTGTAAACC AAGGGTTATG CTTGGATGCA GAAGTGGCCT
1081TAGCAACTGG GCAGTTCCTG GCCCCAAACA GTCACCAGTC CAGCAGTGCG GCCTCTCACT
1141GCTCCGAGTC CCGAGGCGAG ACCCCCTGTT CGTTCAATGA TGAAGATGAG GAAGATGATG
1201AGGAGGATTC CTCCTCCCCA GAATACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1261AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1321TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA TCACGGCATT
1381TAAGGAGTGG GGTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1441att

Download FASTA (ORF) (Full)