Construct: ORF TRCN0000473813

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009853.1_s317c1
Derived from:
ccsbBroadEn_11949
DNA Barcode:
CGTTCAGAAAACATGCATAGCTCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRNT1 (51095)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473813
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NM_001367321.1 93.2% 93.3% 1_87del;948A>G
2 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NM_001367322.1 93.2% 93.3% 1_87del;948A>G
3 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NM_001367323.1 93.2% 93.3% 1_87del;948A>G
4 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NM_182916.3 93.2% 93.3% 1_87del;948A>G
5 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NM_001302946.2 88.6% 88.7% 1_87del;741_742ins60;888A>G
6 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159939.1 47.7% (many diffs)
7 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159940.1 47.4% (many diffs)
8 human 51095 TRNT1 tRNA nucleotidyl transferase 1 XR_001740168.2 47.2% 1_168del;1029A>G;1384_2567del
9 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159935.1 47% 1_165del;1026A>G;1381_2578del
10 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159938.1 45.2% (many diffs)
11 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159941.1 36.8% (many diffs)
12 human 51095 TRNT1 tRNA nucleotidyl transferase 1 XR_001740169.2 34.8% 1_168del;1029A>G;1384_3487del
13 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159934.1 27.2% 1_165del;1026A>G;1381_4452del
14 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159936.1 22.9% (many diffs)
15 human 51095 TRNT1 tRNA nucleotidyl transferase 1 NR_159937.1 22% (many diffs)
16 mouse 70047 Trnt1 tRNA nucleotidyl transferas... NM_001242358.1 82.6% 88.2% (many diffs)
17 mouse 70047 Trnt1 tRNA nucleotidyl transferas... NM_027296.3 82.6% 88.2% (many diffs)
18 mouse 70047 Trnt1 tRNA nucleotidyl transferas... XM_006506581.3 82.6% 88.2% (many diffs)
19 mouse 70047 Trnt1 tRNA nucleotidyl transferas... XM_006506582.3 75.4% 80.4% (many diffs)
20 mouse 70047 Trnt1 tRNA nucleotidyl transferas... NM_001242360.1 37.1% 39.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1281
ORF length:
1215
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gttgcagtct cccgaattcc agtcactttt cacagaagga ctgaagagtc
121tgacagaatt atttgtcaaa gagaatcacg aattaagaat agcaggagga gcagtgaggg
181atttattaaa tggagtaaag cctcaggata tagattttgc caccactgct acccctactc
241aaatgaagga gatgtttcag tcggctggga ttcggatgat aaacaacaga ggagaaaagc
301acggaacaat tactgccagg cttcatgaag aaaattttga gattactaca ctacggattg
361atgtcaccac tgatggaaga catgctgagg tagaatttac aactgactgg cagaaagatg
421cggaacgcag agatctcact ataaattcta tgtttttagg ttttgatggc actttatttg
481actactttaa tggttatgaa gatttaaaaa ataagaaagt tagatttgtt ggacatgcta
541aacagagaat acaagaggat tatcttagaa ttttaagata cttcaggttt tatgggagaa
601ttgtagacaa acctggtgac catgatcctg agactttgga agcaattgca gaaaatgcaa
661aaggcttggc tggaatatca ggagaaagga tttgggtgga actgaaaaaa attcttgttg
721gtaaccatgt aaatcatttg attcacctta tctatgatct tgatgtggct ccttatatag
781gtttaCCTGC TAATGCAAGT TTAGAAGAAT TTGACAAAGT CAGTAAAAAT GTTGATGGTT
841TTTCACCAAA GCCAGTGACT CTTTTGGCCT CATTATTCAA AGTACAAGAT GATGTCACAA
901AATTGGATTT GAGGTTGAAG ATCGCGAAAG AGGAGAAAAA CCTTGGCTTA TTTATAGTTA
961AAAATAGGAA AGATTTAATT AAAGCAACAG ATAGTTCAGA CCCATTGAAA CCCTATCAAG
1021ACTTCATTAT AGATTCTAGG GAACCTGATG CAACTACTCG TGTATGTGAA CTACTGAAGT
1081ACCAAGGAGA GCACTGTCTC CTAAAGGAAA TGCAGCAGTG GTCCATTCCT CCATTTCCTG
1141TAAGTGGCCA TGACATCAGA AAAGTGGGCA TTTCTTCAGG AAAAGAAATT GGGGCTCTAT
1201TACAACAGTT GCGAGAACAG TGGAAAAAAA GTGGTTACCA AATGGAAAAA GATGAACTTC
1261TGAGTTACAT AAAGAAGACC TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1321CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1381AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACGTT CAGAAAACAT
1441GCATAGCTCT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)