Construct: ORF TRCN0000473898
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005936.1_s317c1
- Derived from:
- ccsbBroadEn_01568
- DNA Barcode:
- TGTCAGCATTCTACCTATAACCAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNRPB (6628)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473898
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6628 | SNRPB | small nuclear ribonucleopro... | NM_003091.4 | 100% | 100% | |
| 2 | human | 6628 | SNRPB | small nuclear ribonucleopro... | NM_198216.2 | 95.6% | 95.4% | (many diffs) |
| 3 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349454.1 | 78.6% | 88.3% | (many diffs) |
| 4 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349455.1 | 78.6% | 88.3% | (many diffs) |
| 5 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349456.1 | 78.6% | 88.3% | (many diffs) |
| 6 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349457.1 | 78.6% | 88.3% | (many diffs) |
| 7 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349458.1 | 78.6% | 88.3% | (many diffs) |
| 8 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349459.1 | 78.6% | 88.3% | (many diffs) |
| 9 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349460.1 | 78.6% | 88.3% | (many diffs) |
| 10 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349461.1 | 78.6% | 88.3% | (many diffs) |
| 11 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349462.1 | 78.6% | 88.3% | (many diffs) |
| 12 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349463.1 | 78.6% | 88.3% | (many diffs) |
| 13 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349464.1 | 78.6% | 88.3% | (many diffs) |
| 14 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349465.1 | 78.6% | 88.3% | (many diffs) |
| 15 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_003097.5 | 78.6% | 88.3% | (many diffs) |
| 16 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_022805.4 | 78.6% | 88.3% | (many diffs) |
| 17 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_022806.4 | 78.6% | 88.3% | (many diffs) |
| 18 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_022807.4 | 78.6% | 88.3% | (many diffs) |
| 19 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_022808.4 | 78.6% | 88.3% | (many diffs) |
| 20 | mouse | 20638 | Snrpb | small nuclear ribonucleopro... | NM_009225.2 | 91.7% | 99.5% | (many diffs) |
| 21 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001082961.2 | 77.5% | 88.3% | (many diffs) |
| 22 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001082962.2 | 77.5% | 88.3% | (many diffs) |
| 23 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349690.1 | 77.5% | 88.3% | (many diffs) |
| 24 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349691.1 | 77.5% | 88.3% | (many diffs) |
| 25 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349692.1 | 77.5% | 88.3% | (many diffs) |
| 26 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349693.1 | 77.5% | 88.3% | (many diffs) |
| 27 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349694.1 | 77.5% | 88.3% | (many diffs) |
| 28 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349695.1 | 77.5% | 88.3% | (many diffs) |
| 29 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_013670.4 | 77.5% | 88.3% | (many diffs) |
| 30 | mouse | 20638 | Snrpb | small nuclear ribonucleopro... | XM_006499059.3 | 59.7% | 65.3% | (many diffs) |
| 31 | mouse | 20638 | Snrpb | small nuclear ribonucleopro... | XR_001781572.1 | 47.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 759
- ORF length:
- 693
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgac ggtgggcaag agcagcaaga tgctgcagca tattgattac aggatgaggt 121 gcatcctgca ggacggccgg atcttcattg gcaccttcaa ggcttttgac aagcacatga 181 atttgatcct ctgtgactgt gatgagttca gaaagatcaa gccaaagaac tccaaacaag 241 cagaaaggga agagaagcga gtcctcggtc tggtgctgct gcgaggggag aatctggtct 301 caatgacagt agagggacct cctcccaaag atactggtat tgctcgagtt ccacttgctg 361 gagctgccgg gggcccaggg atcggcaggg ctgctggcag aggaaTCCCA GCTGGGGTTC 421 CCATGCCCCA GGCTCCTGCA GGACTTGCTG GGCCAGTCCG TGGGGTTGGC GGGCCATCCC 481 AACAGGTGAT GACCCCACAA GGAAGAGGTA CTGTTGCAGC CGCTGCAGCT GCTGCCACAG 541 CCAGTATTGC CGGGGCTCCA ACCCAGTACC CACCTGGCCG TGGGGGTCCT CCCCCACCTA 601 TGGGCCGAGG AGCACCCCCT CCAGGCATGA TGGGCCCACC TCCTGGTATG AGACCTCCTA 661 TGGGTCCCCC AATGGGGATC CCCCCTGGAA GAGGGACTCC AATGGGCATG CCCCCTCCGG 721 GAATGCGGCC TCCTCCCCCT GGGATGCGAG GCCTTCTTTG CCCAACTTTC TTGTACAAAG 781 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 841 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 901 ACGATGTCAG CATTCTACCT ATAACCAGAC GCGTTAAGTC gacaatcaac ctctggatta 961 caaaatttgt gaaagatt