Construct: ORF TRCN0000473963

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014194.1_s317c1
Derived from:
ccsbBroadEn_10897
DNA Barcode:
TCAAGCGGATCTCGCTTAGTCTGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IDI1 (3422)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473963
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3422 IDI1 isopentenyl-diphosphate del... NM_001317955.2 100% 100%
2 human 3422 IDI1 isopentenyl-diphosphate del... NM_001317956.2 100% 100%
3 human 3422 IDI1 isopentenyl-diphosphate del... XM_024447979.1 81.3% 79.1% (many diffs)
4 human 3422 IDI1 isopentenyl-diphosphate del... XM_017016191.2 80.8% 76.4% (many diffs)
5 human 3422 IDI1 isopentenyl-diphosphate del... NM_001317957.2 80.3% 80.2% (many diffs)
6 human 3422 IDI1 isopentenyl-diphosphate del... NM_004508.3 80.2% 80.2% 1_168del
7 human 3422 IDI1 isopentenyl-diphosphate del... XM_024447980.1 79.7% 78.5% (many diffs)
8 human 3422 IDI1 isopentenyl-diphosphate del... NR_134301.1 22.1% (many diffs)
9 human 3422 IDI1 isopentenyl-diphosphate del... NR_134300.2 20.7% (many diffs)
10 mouse 102635781 Gm38481 predicted gene, 38481 XM_006498513.3 84.6% 86.4% (many diffs)
11 mouse 319554 Idi1 isopentenyl-diphosphate del... NM_145360.2 68.3% 69.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
750
ORF length:
684
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat gcctgaaata aacactaacc acctcgacaa gcaacaggtt caactcctgg
121cagagatgtg tatccttatt gatgaaaatg acaataaaat tggagctgag accaagaaga
181attgtcacct gaacgagaac attgagaaag gattattgca tcgagctttt agtgTCTTCT
241TATTCAACAC CGAAAATAAG CTTCTGCTAC AGCAAAGATC AGATGCTAAG ATTACCTTTC
301CAGGTTGTTT TACGAATACG TGTTGTAGTC ATCCATTAAG CAATCCAGCC GAGCTTGAGG
361AAAGTGACGC CCTTGGAGTG AGGCGAGCAG CACAGAGACG GCTGAAAGCT GAGCTAGGAA
421TTCCCTTGGA AGAGGTTCCT CCAGAAGAAA TTAATTATTT AACACGAATT CACTACAAAG
481CTCAGTCTGA TGGTATCTGG GGTGAACATG AAATTGATTA CATTTTGTTG GTGAGGAAGA
541ATGTAACTTT GAATCCAGAT CCCAATGAGA TTAAAAGCTA TTGTTATGTG TCAAAGGAAG
601AACTAAAAGA ACTTCTGAAA AAAGCAGCCA GTGGTGAAAT TAAGATAACG CCATGGTTTA
661AAATTATTGC AGCGACTTTT CTCTTTAAAT GGTGGGATAA CTTAAATCAT TTGAATCAGT
721TTGTTGACCA TGAGAAAATA TACAGAATGT GCCCAACTTT CTTGTACAAA GTGGTTGATA
781TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
841CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATCAAG
901CGGATCTCGC TTAGTCTGTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
961tgaaagatt

Download FASTA (ORF) (Full)